Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1443 ATGGGTTTTTCTGCGATGGTTAAGTCTCTGCTGCTAGCAACTCTCTTGCTAGGTGCCATTGCTCAAGCGAGGTGCTTCACTTTCAATTTCCCATCTTTCAATGAAGACAATGAAAAAGATCTCATCTTGGAATATTCAGTAATAAAGCACGACGCCATCCAAGTTACAGATGACGTTACTGATGCGTCGCTGCTGAAAAATCTGTCTGGCCGGGCTTTGTACAAAAGTCCATTCAGGTTTGGGAGCAAAAGCAAAGACAAGGCATCTTTTAATTCCACCTTTGTACTCAACATCTCCAACAAGACAAACCAAGGTGGTGAAGGCTTGGCCTTTATCTTAACTGGACGTACTGATCTTCCGCAAAATAGCCACGGACAATGGCTTGGGATTGTGAATGAGTCGACTAATGGATCGGCTACAGCCAAGATAGTGGCGGTGGAATTCGACACCAGGAAGAGTTACCCAGAAGATTTGGATGATAACCATGTCGGTCTAGACGTGAATTCCATATATTCAATCACTCAACAGAGCCTGCAGAGCATCAAGCTTGTAAGTGGTGATAATATAACAGTGAAAGTTGAGTACGATGGGGAACTTTTGAAAGTATTTGTAGGAGAAAACGCGAGCACACTTGTAATTTCAGAGACTATTGATCTCGTAACACGTCTACCTGAGAAGGTCTATGTGGGGTTCTCAGCTTCAACGGGAAACGACACCCAACTAAACTGTGTAAAGTCATGGGAATTCAGTGGGTTGGATCTATATAAAGAAGATCCTAACCTGCTATGGGTTTGGATTATTGTCCCTGCCGTGCTAGTTTTATTTTTCGTGTTTGTTTTCTTGTATTGGAAATGGAAATGCAAAGGTGAGGTTCCGGTGGAGGAGGTCGAAGATGATAGGGAGGTAGAGATATGTATTCAAGGTTCATCCACGGCTCCAAGGAAGTTTAGATTGGAAGAACTCAAAGCTGCTACAGAAAACTTCAAGAACAAGCTTGGAGAAGGTGGATTTGGGACGGTGTACGAAGGATTTTTGGAAAATAAAGCAGTGGCGGTGAAAAGATTTTCTAGGGATGCACGTGAAGGCAAGCAAGATTTTATAGCAGAAGTCACAACAATCGGCAATCTCAATCACAAGAATCTTGTCAAATTATTGGGGTGGTGCAGTGAAAGAAATGAACTGATTCTGGTGTATGAGTTCATGCCAAATAAGAGCCTCGACAAGTTCATATTTTGCAATCAAAATCCGGGTCCTGAGACCGATCAAATTACCCTGAATTGGGGAAAGAGGTATCGGATCATTAATGGGGTTGCTCAGGCGCTGGACTATCTTCATAATGGATGCGAGAAGAGGGTGCTTCATCGGGACATAAAAGCAAGCAACATCATGCTGGATTCTGAGTTCAATGCCCGGTTGGGGGATTTTGGCCTGGCCCGGACCATCCATTGCAGCGATCAAACTCATCATTCCACCAAAGAAGTTGCAGGAACACCTGGCTATATGGCTCCAGAAAGCATCCTTACTTGGAGGGCAACTGTTGAAACCGATATCTACGCATTTGGCGTCCTTGTACTGGAAGTTGTCTCTGGCAGAAGTCCCGGAGATCAAAGCAAAAAGAATAAGTACACCAGCCTGGTGGATTGGGCATGGGAGAACTACAGCAGGGAAAGGATTCTTGATGTGGTAGATTTACATTTGAATGGGGATTTCAACAAGGAGGAAGCTGAATGTGTGTTGATATTGGCATTGGCCTGCTGCCATCCGAATCCATACCAGAGGCCATCAACCAAGACTGCTTTGCGGGTTCTCACAGGAGAGGTAGCTCCACCACTTATCCCCAAGGCCAAACCTTCTTTCATGTGGCCAGCCATGGAACCTCCATCCTTCAATGAGGATTCGAAGGACTACACTTTTGGTGGAGACCAGCCTTCTCCATTTGCAGAACCCAGTGGGAGATAA 1959 0.4492 MGFSAMVKSLLLATLLLGAIAQARCFTFNFPSFNEDNEKDLILEYSVIKHDAIQVTDDVTDASLLKNLSGRALYKSPFRFGSKSKDKASFNSTFVLNISNKTNQGGEGLAFILTGRTDLPQNSHGQWLGIVNESTNGSATAKIVAVEFDTRKSYPEDLDDNHVGLDVNSIYSITQQSLQSIKLVSGDNITVKVEYDGELLKVFVGENASTLVISETIDLVTRLPEKVYVGFSASTGNDTQLNCVKSWEFSGLDLYKEDPNLLWVWIIVPAVLVLFFVFVFLYWKWKCKGEVPVEEVEDDREVEICIQGSSTAPRKFRLEELKAATENFKNKLGEGGFGTVYEGFLENKAVAVKRFSRDAREGKQDFIAEVTTIGNLNHKNLVKLLGWCSERNELILVYEFMPNKSLDKFIFCNQNPGPETDQITLNWGKRYRIINGVAQALDYLHNGCEKRVLHRDIKASNIMLDSEFNARLGDFGLARTIHCSDQTHHSTKEVAGTPGYMAPESILTWRATVETDIYAFGVLVLEVVSGRSPGDQSKKNKYTSLVDWAWENYSRERILDVVDLHLNGDFNKEEAECVLILALACCHPNPYQRPSTKTALRVLTGEVAPPLIPKAKPSFMWPAMEPPSFNEDSKDYTFGGDQPSPFAEPSGR* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1443 652 Pfam Protein kinase domain 329 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1443 652 Gene3D - 25 258 - -
Vvi8g1443 652 ProSitePatterns Protein kinases ATP-binding region signature. 332 353 IPR017441 GO:0005524
Vvi8g1443 652 CDD STKc_IRAK 332 605 - -
Vvi8g1443 652 Pfam Legume lectin domain 27 250 IPR001220 GO:0030246
Vvi8g1443 652 PANTHER - 56 613 - -
Vvi8g1443 652 SMART serkin_6 326 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1443 652 Gene3D Transferase(Phosphotransferase) domain 1 401 608 - -
Vvi8g1443 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Vvi8g1443 652 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 250 IPR013320 -
Vvi8g1443 652 MobiDBLite consensus disorder prediction 623 652 - -
Vvi8g1443 652 FunFam probable L-type lectin-domain containing receptor kinase S.5 401 609 - -
Vvi8g1443 652 ProSitePatterns Legume lectins beta-chain signature. 144 150 IPR019825 -
Vvi8g1443 652 SUPERFAMILY Protein kinase-like (PK-like) 310 603 IPR011009 -
Vvi8g1443 652 Gene3D Phosphorylase Kinase; domain 1 313 400 - -
Vvi8g1443 652 CDD lectin_legume_LecRK_Arcelin_ConA 26 250 IPR001220 GO:0030246
Vvi8g1443 652 ProSiteProfiles Protein kinase domain profile. 326 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1443 652 ProSitePatterns Legume lectins alpha-chain signature. 223 232 IPR000985 -
Vvi8g1443 652 FunFam Probable L-type lectin-domain containing receptor kinase S.5 25 258 - -
Vvi8g1443 652 FunFam serine/threonine-protein kinase PBS1-like 294 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1443 Vvi-Chr8 20316764 20318722 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1443 69 619 Receptor kinase-like Gene Family AT5G55830 38.386 6.69e-113 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi8g1443 Pkinase 3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1443 - - vvi:100264008 1294.64