Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1441 ATGGCTCCAGAAAGTCTTCTTGTTGGCAGGGCAACAGTTCAAACGGATGTTTATGCGTTTGGTATCCTAGTACTTGAAGTTGTATGTGGAAGAAAGCCAGGAAACCAAAGTTTGCCGAACAACTATAACAACAGCATAGTGGATTGGGTATGGGAAAATTACAAGAGAGGGAGCATTCTTGATGTTGTGGATTTGCAATTAAATGAGGTTTTCGTCAAGGAGGAAGCTGAATGTGTGTTGATGTTAGCATTGGCCTGTTGCCATCCAAATCCAAACCATAGGCCATCCATGAGAATTGCTTTGAGGGTTCGTGCAGGAGAGGTTGCTCCACCAGTTATCCCCATGGACAAACCTGCTTTTGTGTGGCCACCGGCAATGCCTCCATCTTCGAACGAGGATCTAGAGGACTACTCTTTCAGTGGAGACCAAAATACTCCATCTTCAAAACTGATTGGGAGGGGAAAATCATGCCAAATATTCAAACTCAAGGGTGCCCATCTTCTATAA 507 0.4438 MAPESLLVGRATVQTDVYAFGILVLEVVCGRKPGNQSLPNNYNNSIVDWVWENYKRGSILDVVDLQLNEVFVKEEAECVLMLALACCHPNPNHRPSMRIALRVRAGEVAPPVIPMDKPAFVWPPAMPPSSNEDLEDYSFSGDQNTPSSKLIGRGKSCQIFKLKGAHLL* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1441 168 ProSiteProfiles Protein kinase domain profile. 1 113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1441 168 SUPERFAMILY Protein kinase-like (PK-like) 1 138 IPR011009 -
Vvi8g1441 168 PANTHER - 1 108 - -
Vvi8g1441 168 Pfam Protein tyrosine and serine/threonine kinase 1 98 IPR001245 GO:0004672|GO:0006468
Vvi8g1441 168 Gene3D Transferase(Phosphotransferase) domain 1 1 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1441 Vvi-Chr8 20306898 20307404 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1441 1 118 Receptor kinase-like Gene Family AT5G03140 43.902 1.63e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi8g1441 PK_Tyr_Ser-Thr 1.5e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1441 - - vvi:100262448 275.789