Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1440 ATGCTACACAACCGATCTTTGCTGTGCTTTTCTTCAGTAGTTAACTTTCTACTACTAGTAGCTCTCTTGGTTGGCGCTGTTGCTCAAGCTGGCTGTTTCAGTTTCAATTATTCAAGTTTTACGGAAGAAGATGAGACCAATCTCATTTTAAAGAATTCATATATAGCTTTGGGTGGCATCCAGGTTACACCTGATGTTTCAAGCATAGATTTCAGCAGGAATCAGTCTGGCCGAGCGCTGTACAAAAGACCATTCAGGTTGTGGAGCAAAAGCAAAGGCATGGCATCTTTTAATTCCACCTTTGTACTTAACATCATCAACACCACAAACCCAGGTGGTGACGGTTTGGCCTTTATCTTAACTGGACATACCGATCTTCCAAGTAACAGCCAAGGACAATGGCTTGGGATCGTGAATGAGGCCACGGTATCATCACCTGAAATTGAAACGGTGGCAGTAGCATTTCTCACTGGGAGGAGTAACACAGAAAATTTGAATGGTAGCCGGATTGGACTGAACTTGAATGGCTATTTAAAAAAACAAGAAAGCCTATATGTGGATCTTTCAAGTGGTATGGACGTCAAGGTGAGAATTCGGTATGATGGGGAGGTTTTGAGGGTTTTTGTGGGGGAAGACACGAGCTCACCAGCAATTTCTGACTCTCTTAATTTCTCCATCTATCTGCGTCACAAAGTTTATGTGGGATTCTCAGCTTCAACGGGAAATTATTCCCAACTAAACTATGTAAGGTCATGGGAATTCAGTGTATTAGATTTAGATGATCATCAGATGCCGCAATGGATCTGGATCATAGTTGCTGCAGTAATAGCTTTGTTTATTGGATTTGCCTTTTCCTTGTATTGGAAATGGAAATATTATGTCAGGAAGGGAGATGATCCGGGATTTGAGCTACAGATTCAAGGCTTATCCACGGCTCCAAGAAAATTCAGATTGAAAGAACTGGAGTCTGCCACAGAGAACTTCAATTCTGATAACTTGCTCGGCAGAGGTGGATTTGGGACTGTCTATAAAGGAGTATCGATAAATAGGGAGGTAGCTGTGAAAAGATTTTCAAGGAATTCACATGAGGGCAAGCAAGATTTTATAGCAGAAATCACAACAATCAGCAACCTCCATCACAGAAATCTTGTGAAATTATTGGGATGGTGCCATGAGAGAGATGAACTGCTTCTGGTGTATGAGTTCATGCCAAATAAGAGCCTAGACAAGCTCATATTTTGCAATCAGAATCATGGAGCAGAGACTAACCCAGTTACTCTGAATTGGGAAAGGAGGCATGGTGTCATTTATGGGGTGACACAGGCACTGGACTACCTTCATAATGGATGTGAGAAGAGGGTGCTTCACCGAGACATAAAGGCAAGTAATGTAATGCTGGACTCAGAATTCAACGCCCGATTGGGGGATTTTGGACTGGCTCGAACCATCAATCCGAGTGATCAAACTCACCATTCCACCAAAGCAATTGCAGGAACGCCTGGCTACATGGCTCCAGAAAGTTTTCTTATTGGGAGGGCAACAGTTCAAACAGATGTTTACGCATTTGGTGTCCTGGTACTTGAAGTTGTCTGTGGAAGAAAGCCTGGAAGACAAAGCACGCAGAACAACTATAACAATAGCATAGTGGATTGGGTATGGGAAAATTACAGGGGAGGGAGCATTCTGGATGTGGTAGATTTGCAATTGAATGGGATTTTCAGCAAGGAGCAAGCTGAATGTGTATTGGTTTTGGCTCTGGCTTGTTGCCATCCAAATCCATACCAGAGGCCATCCATGAGAACTGTCTTGAGGGTTCTTGCAGGAGAGGTTGCTCCACCAGTTATCCCCATGGACAGACCTGCTTTTGTGTGGCCACCTGCAATGCCCCCATCTCTCAATGAGGATTTGCAGGACTACACTTTCAGTGGAGACCGAAACACCCCATCTTCAGAACTGATTGGAAGATGA 1968 0.436 MLHNRSLLCFSSVVNFLLLVALLVGAVAQAGCFSFNYSSFTEEDETNLILKNSYIALGGIQVTPDVSSIDFSRNQSGRALYKRPFRLWSKSKGMASFNSTFVLNIINTTNPGGDGLAFILTGHTDLPSNSQGQWLGIVNEATVSSPEIETVAVAFLTGRSNTENLNGSRIGLNLNGYLKKQESLYVDLSSGMDVKVRIRYDGEVLRVFVGEDTSSPAISDSLNFSIYLRHKVYVGFSASTGNYSQLNYVRSWEFSVLDLDDHQMPQWIWIIVAAVIALFIGFAFSLYWKWKYYVRKGDDPGFELQIQGLSTAPRKFRLKELESATENFNSDNLLGRGGFGTVYKGVSINREVAVKRFSRNSHEGKQDFIAEITTISNLHHRNLVKLLGWCHERDELLLVYEFMPNKSLDKLIFCNQNHGAETNPVTLNWERRHGVIYGVTQALDYLHNGCEKRVLHRDIKASNVMLDSEFNARLGDFGLARTINPSDQTHHSTKAIAGTPGYMAPESFLIGRATVQTDVYAFGVLVLEVVCGRKPGRQSTQNNYNNSIVDWVWENYRGGSILDVVDLQLNGIFSKEQAECVLVLALACCHPNPYQRPSMRTVLRVLAGEVAPPVIPMDRPAFVWPPAMPPSLNEDLQDYTFSGDRNTPSSELIGR* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1440 655 FunFam Probable L-type lectin-domain containing receptor kinase S.5 313 402 - -
Vvi8g1440 655 Pfam Protein kinase domain 329 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1440 655 Gene3D Phosphorylase Kinase; domain 1 313 402 - -
Vvi8g1440 655 SMART serkin_6 328 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1440 655 Gene3D - 32 264 - -
Vvi8g1440 655 Pfam Legume lectin domain 34 258 IPR001220 GO:0030246
Vvi8g1440 655 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 256 IPR013320 -
Vvi8g1440 655 FunFam probable L-type lectin-domain containing receptor kinase S.5 403 612 - -
Vvi8g1440 655 CDD lectin_legume_LecRK_Arcelin_ConA 33 256 IPR001220 GO:0030246
Vvi8g1440 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Vvi8g1440 655 SUPERFAMILY Protein kinase-like (PK-like) 311 636 IPR011009 -
Vvi8g1440 655 Gene3D Transferase(Phosphotransferase) domain 1 403 619 - -
Vvi8g1440 655 ProSiteProfiles Protein kinase domain profile. 328 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1440 655 CDD STKc_IRAK 334 606 - -
Vvi8g1440 655 ProSitePatterns Protein kinases ATP-binding region signature. 334 355 IPR017441 GO:0005524
Vvi8g1440 655 PANTHER - 52 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1440 Vvi-Chr8 20292606 20294573 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1440 33 622 Receptor kinase-like Gene Family AT5G55830 36.476 4.56e-113 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi8g1440 Pkinase 5.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1440 - - vvi:100262448 1280.39