Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1439 ATGTTAAGCCATGATTTTCTGCGGTTTAATGCAGTAGCACTAGCAACTGTCTTGGTTGGCGCTGTTACTCAAGCTGAATGCTTCAATTTCAGTTATCCAATTTTCAAACCACAAAAAGGAGATGATTTGACGTTCTTCGGAGATTCATATATGGCTTCTGACACCATCCAGCTAACACAAAATGTTTTAAATAATGGAGGATGTGGCCGGGTCTTTTATACAAGGCCTTTGAAGTTGTGGAGCACAGGCAGAGGCACATTACCTTTTAATTCCACCTTTGTGATCAATATCACTCCCCTCACATATCCAGGGGGTGAAGGCCTGGCTTTTATCTTAACCGGGCATGCGGATATTCCAGCCAACAGCGTAGGAAAATGGCTTGGGATTATAAGCGAGAATACAATGGGGTCAAGTACAAGGGGAGCTGTGGCAGTAGAATTTGACACCAGGAACAGCTACCCAGAGGACTTGGATGATAACCACGTCGGCCTGGATCTGAATAGCATCTACTCAAGAAAACAAGAGAGTTTAAGTGTCAATCTTTCAAGTGGTATTGATATAAAGGTGAAGGTTCAATATGATGGGCAAGGCTTGAGCATTTTTGTTGGGGAAAACAGGAGCGTTCCTGTAATTTTCGAGTCACTTAATCTCTACGACTATCTACCTCAGAAGGTTTATGTAGGATTCTCAGCTTCAACTGGAGTTTATGCACAGATCAATTATGTGAAGTCATGGGAATTCAGTGGGTTGGAACTATATGATGATGCCCCTAACCTGCTATGGGTCTGGATCACGGTTCCTGGGGCAATAGGTTTGGTTATTGGATTTTCTGCCTTCCTGTACTGGAAATGGCAACGCAAAACCAAGGATCATGTGGAGGAGGAGGATGATCCAGGGTGGTTTGAGCTGCAGATTCAAGGCTCATCCACGGCTCCAAGAAAATTCAAATTGAAAGAACTGGAAGCTGCCACAGAAAACTTCAATTCTGATAACTTGCTTGGCAGAGGTGGATTTGGGACCGTCTATAAAGGAGTCTTGGTAAATAGGGAGGTAGCTGTGAAAAGATTTTCAAGGAATTCACATGAGGGCAAGCGAGATTTTATAGCAGAAATCACAACAATCAGCAACCTCCATCACAGAAATCTTGTGAAATTATTGGGATGGTGCCATGAGAGAGATGAACTGCTTCTGGTGTATGAGTTCATGCCAAATAAGAGCCTCGACATGCTCATATTTTGCAATCAGAATCACGGAGTAGAGACTAACCCAGTTACTCTGAATTGGGAAAGGAGGCATGCTGTCATTTATGGGGTGGCACAGGCACTGGACTACCTTCATAATGGATGTGAGAAGAGGGTGCTTCACCGAGACATAAAGGCAAGCAATGTAATGCTGGACTCAGAGTTCAACGCCCGATTGGGGGATTTTGGACTGGCTCGAACCATCAATCCTAGTGACCAAACTCACCATTCCACCAAAGCAATTGCAGGAACGCCTGGCTACATGGCTCCAGAAAGTTTTCTTATTGGGAGGGCAACAGTTCAAACAGATGTTTACGCATTTGGTGTCCTGGTACTTGAAGTTGTCTGTGGAAGAAAACCTGGAAGACAAAGCATGCAGAACAATTATAACAGCAGCATTGTGGATTGGGTATGGGAAAATTACAGGGGAGGGAGCATTCTGGATGTGGTAGATTTGCAATTGAATGGGGTTTTCAGCAAGGAGCAAGCTGAATGTGTATTGGTTTTGGCACTGGCTAGTTGTCATCCAAATCCATTCCAGAGGCCATCCATGAGAACTGCCTTGAGGGTTCTTGCCGGAGAGGTTGCTCCACCAGTTATCCCCATGGACAGACCTGCTTTTGTGTGGCCACCTGCAATGCCTCCGTCTCTCAACGAGGATTTGGAGGACTACCCTTTCAGTGGAGACCAAAATACTCCATCTTCACAACTGATTGGGAGATAA 1965 0.4478 MLSHDFLRFNAVALATVLVGAVTQAECFNFSYPIFKPQKGDDLTFFGDSYMASDTIQLTQNVLNNGGCGRVFYTRPLKLWSTGRGTLPFNSTFVINITPLTYPGGEGLAFILTGHADIPANSVGKWLGIISENTMGSSTRGAVAVEFDTRNSYPEDLDDNHVGLDLNSIYSRKQESLSVNLSSGIDIKVKVQYDGQGLSIFVGENRSVPVIFESLNLYDYLPQKVYVGFSASTGVYAQINYVKSWEFSGLELYDDAPNLLWVWITVPGAIGLVIGFSAFLYWKWQRKTKDHVEEEDDPGWFELQIQGSSTAPRKFKLKELEAATENFNSDNLLGRGGFGTVYKGVLVNREVAVKRFSRNSHEGKRDFIAEITTISNLHHRNLVKLLGWCHERDELLLVYEFMPNKSLDMLIFCNQNHGVETNPVTLNWERRHAVIYGVAQALDYLHNGCEKRVLHRDIKASNVMLDSEFNARLGDFGLARTINPSDQTHHSTKAIAGTPGYMAPESFLIGRATVQTDVYAFGVLVLEVVCGRKPGRQSMQNNYNSSIVDWVWENYRGGSILDVVDLQLNGVFSKEQAECVLVLALASCHPNPFQRPSMRTALRVLAGEVAPPVIPMDRPAFVWPPAMPPSLNEDLEDYPFSGDQNTPSSQLIGR* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1439 654 SMART serkin_6 327 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1439 654 Gene3D - 26 252 - -
Vvi8g1439 654 Gene3D Phosphorylase Kinase; domain 1 312 401 - -
Vvi8g1439 654 Pfam Protein kinase domain 328 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1439 654 FunFam Probable L-type lectin-domain containing receptor kinase S.5 312 401 - -
Vvi8g1439 654 ProSiteProfiles Protein kinase domain profile. 327 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1439 654 PANTHER - 57 615 - -
Vvi8g1439 654 ProSitePatterns Protein kinases ATP-binding region signature. 333 354 IPR017441 GO:0005524
Vvi8g1439 654 Pfam Legume lectin domain 29 248 IPR001220 GO:0030246
Vvi8g1439 654 CDD STKc_IRAK 333 605 - -
Vvi8g1439 654 MobiDBLite consensus disorder prediction 633 654 - -
Vvi8g1439 654 CDD lectin_legume_LecRK_Arcelin_ConA 28 248 IPR001220 GO:0030246
Vvi8g1439 654 Gene3D Transferase(Phosphotransferase) domain 1 402 618 - -
Vvi8g1439 654 FunFam Probable L-type lectin-domain containing receptor kinase S.5 27 256 - -
Vvi8g1439 654 ProSitePatterns Legume lectins alpha-chain signature. 221 230 IPR000985 -
Vvi8g1439 654 SUPERFAMILY Protein kinase-like (PK-like) 310 639 IPR011009 -
Vvi8g1439 654 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 248 IPR013320 -
Vvi8g1439 654 FunFam probable L-type lectin-domain containing receptor kinase S.5 402 611 - -
Vvi8g1439 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Vvi8g1439 654 MobiDBLite consensus disorder prediction 639 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1439 Vvi-Chr8 20289839 20291803 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1439 24 621 Receptor kinase-like Gene Family AT5G55830 35.222 1.45e-113 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi8g1439 Pkinase 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1439 - - vvi:100267601 1333.16