LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi8g1438	ATGGCATTCTACCATTTTCCGGGCTCTTCTGCGGTAGTCGGGGCTCTGCTGCTAGCAACTTTCTTGGTTGGCGCTGTGGATCGAGCTGGCTGTTTCAGTTTCAATTATTCGACTTTTGAGAAAGCAAATGAGTCCGATTTCACCCTATATAATTCGTATATAATTCTCGGTGCCATCCAGGTTACGCCTGATGTTACAAAAGAAGACTACCTCGCGAATCAGTCTGGGCGGGCCCTGTTCAAAAGGCCATTCAGGTTGCGGAACAACACGTCTTTTAGTTCCACCTTTGTACTTAACATCTCCAACAAGACAAACCCAGGTGGCGAAGGCTTGGCCTTTATCTTAACCGGGAGTACCGATCTTCCACCAAGCAGCCATGGGCAATGGCTTGGGATTGTGAATCAGGCTACTAATGGAACGGCTAAAGCCCAGATTGTGGCGGTGGAATTTGACACCAGGAAGAGCTACCCAGAAGATCTGGATGATAACCACGTCGGTCTGAATGTGAATTCCATCAATTCAATCACTCAAAAGAACCTAAGCCTCAAGCTTTCAATTGGTAAGGATGTAACGGTGAAAGTTGAGTATGACGGGGGAGTTTTGAAAGTGTTTGTTGAAGAAAACGCGAGCACGCCTGTGATTTCTGAGCCTATTGATCTCTCAACATATCTGCCTGAGAAGATCTACGTGGGGTTCTCAGCTTCAACTGGGAACGAGATCGAGCTCAACTGTGTAAGGTCGTGGGAATTTGATGGGTTGGATATATATGAAGAAAAAAGCCTGGTTTGGGTGTGGATCACAGTCCCTTCAGTAGTGTTTCTTTCCGTCACCATTGCCCTCTTGTATTGGAGATGCACACGGGAAGACGAGGGTCGCGTGGAGGATGATGATGATCCAGAAGTGGAGCTACAAATTCAAGGTTCATCCATGGCTCCAAAGAGATTCAGACTAAAAGAACTTCAAGCTGCCACTGCCAACTTCAACAGCAAGAACCAGCTTGGAGAAGGGGGATTTGGGAAAGTCTACAAAGGAGTCTTGGAAAAGAAGGAGGTAGCTGTGAAGAGATTTTCGAGGAACTCCCATCAAGGAAAGCAAGATTTTATAGCAGAAGTCACAACCATTGGAAACCTCCACCACAAGAATCTCGTAAAATTAGCGGGATGGTGCTATGAAAGAAGTGAGCTGCTTCTTGTGTATGAGTTCATGCCAAATAAAAGCCTCGACAAACTCATCTTCAGCAATCAAAAGCAAAGCACAGAGACTAACCCAATCGCACTGGATTGGGAAAAAAGGCATAGCATCATCCGTGGAGTGGCTCAGGCGCTGGACTACCTTCACAATGGATGCCAGGATAGGGTGCTTCACCGGGACATCAAAACAAGCAACATCATGCTAGATTCTGAGTTCAACGCGCGGTTGGGGGACTTTGGACTGGCCAGAACCATCCATCCCAATGACCAAACTCACCATTCCACCCAAGTTCTTGCAGGAACACATGGCTATATGGCTCCAGAAAGCTTCCACAACAGCAGAGCAACCGTTGAAACAGACGTGTATGCTTTTGGGGTTCTTCTATTGGAAGTTGTCTGTGCAAGAAAGCCTGGAACTCAGAGCATGGAGAACGATTATAACAACAGTATAGTGGACTGGGTGTGGGCGCATCACAGGAGGGACAGGCTTTTTGAAGTCGTAGATTTCCGATTGAACGGGGATTTCAACAGGGAGCAAGTTGAATGTGTGTTGATGTTGGCATTGGCCTGCTGCCATCCGAATCCATACGAGAGGCCATCCATGAGAACTGCTTTGAGGGTTCTCACAGGGGAGGTTGATCCACCACTTATCCCCTTTGACAAGCCTGTTTTCATGTGGCCAGCCACAGCTCCTCCATCTTTCAATGAGGATTTGGAGTACTGCTCTGTAAGTGGAGGCCAAATGACTCCCCTTTCAGAGCTCAGTGGGAGATAA	1965	0.4733	MAFYHFPGSSAVVGALLLATFLVGAVDRAGCFSFNYSTFEKANESDFTLYNSYIILGAIQVTPDVTKEDYLANQSGRALFKRPFRLRNNTSFSSTFVLNISNKTNPGGEGLAFILTGSTDLPPSSHGQWLGIVNQATNGTAKAQIVAVEFDTRKSYPEDLDDNHVGLNVNSINSITQKNLSLKLSIGKDVTVKVEYDGGVLKVFVEENASTPVISEPIDLSTYLPEKIYVGFSASTGNEIELNCVRSWEFDGLDIYEEKSLVWVWITVPSVVFLSVTIALLYWRCTREDEGRVEDDDDPEVELQIQGSSMAPKRFRLKELQAATANFNSKNQLGEGGFGKVYKGVLEKKEVAVKRFSRNSHQGKQDFIAEVTTIGNLHHKNLVKLAGWCYERSELLLVYEFMPNKSLDKLIFSNQKQSTETNPIALDWEKRHSIIRGVAQALDYLHNGCQDRVLHRDIKTSNIMLDSEFNARLGDFGLARTIHPNDQTHHSTQVLAGTHGYMAPESFHNSRATVETDVYAFGVLLLEVVCARKPGTQSMENDYNNSIVDWVWAHHRRDRLFEVVDFRLNGDFNREQVECVLMLALACCHPNPYERPSMRTALRVLTGEVDPPLIPFDKPVFMWPATAPPSFNEDLEYCSVSGGQMTPLSELSGR*	655

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi8g1438	654	CDD	lectin_legume_LecRK_Arcelin_ConA	32	250	IPR001220	GO:0030246
	Vvi8g1438	654	Gene3D	-	31	254	-	-
	Vvi8g1438	654	SUPERFAMILY	Protein kinase-like (PK-like)	310	636	IPR011009	-
	Vvi8g1438	654	FunFam	probable L-type lectin-domain containing receptor kinase S.5	402	611	-	-
	Vvi8g1438	654	SUPERFAMILY	Concanavalin A-like lectins/glucanases	31	251	IPR013320	-
	Vvi8g1438	654	ProSitePatterns	Protein kinases ATP-binding region signature.	333	354	IPR017441	GO:0005524
	Vvi8g1438	654	Pfam	Protein kinase domain	328	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi8g1438	654	PANTHER	-	63	612	-	-
	Vvi8g1438	654	Gene3D	Phosphorylase Kinase; domain 1	312	401	-	-
	Vvi8g1438	654	CDD	STKc_IRAK	333	607	-	-
	Vvi8g1438	654	Gene3D	Transferase(Phosphotransferase) domain 1	402	610	-	-
	Vvi8g1438	654	Pfam	Legume lectin domain	33	251	IPR001220	GO:0030246
	Vvi8g1438	654	ProSiteProfiles	Protein kinase domain profile.	327	613	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi8g1438	654	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	312	401	-	-
	Vvi8g1438	654	ProSitePatterns	Legume lectins beta-chain signature.	146	152	IPR019825	-
	Vvi8g1438	654	SMART	serkin_6	327	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi8g1438	654	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	453	465	IPR008271	GO:0004672\|GO:0006468
	Vvi8g1438	654	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	31	259	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi8g1438	Vvi-Chr8	20285632	20287596	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi8g1438	32	621	Receptor kinase-like Gene Family	AT5G55830	36.728	5.89e-119	368

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vvi8g1438		Pkinase	6.3e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi8g1438	-		-	vvi:100243597	1313.13