Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1433 ATGTTTTCGTGGTTGGCAAGGCTTGCATTGGCGTGTTGGGGACCTTTGGCCCGTCGATATGCCCCTATGAGCAAGGATGATGATAATTCTGGAAGCGGTGCCAACGACGCGCTCATCTGGTGCCGGGACCTCGAGAAGCACTCATTCGGCGAGTTCTCGTTCGCCGTCGTGCAGGCCAATGAGGTTATCGAAGACCACAGCCAGGTCGAAACGGGCCGCGATGCCACGTTCGTCGGGGTCTACGACGGCCACGGTGGTCCTGAAGCCTCTCGTTTCATCTCCGATCATCTTTTTCTTCATCTAATGAGGCTTGCTCGAGAAAATGGAACAATGTCTGAGGATATCCTCAGAAGTGCTTTTTCTGCGACTGAGGATGGTTTTCTTACTCTTGTGCGTAGGACATGTGGAATAAAACCAGTAATTGCAGCAATTGGGTCTTGTTGTCTGGTTGGAGTTATCTGGAGAGGAACATTATATGTTGCTAACTTGGGTGATTCTCGGGCCGTAATAGGTTGCTTAGGTAGATCAAATAAAATCATTGCTGAGCAGTTGTCCAGGGAACACAATGCAAGTATGGAGGAGGTCAGACAAGAACTCAGGTCCTTGCATCCAGATGATTCACATATTGTAGTTATGAAGCATGGGGTCTGGCGTATCAAAGGCATAATTCAGGTATCGAGATCTATAGGTGATGCATACTTGAAGAGGCCGGAGTTCTCTCTTGATCCATCTTTCCCACGATTCCACCTTCCTGAACCCATTCGTCGGCCTGTGCTAACAGCAGAACCATCCATATGTACAAGAGTATTGCAACCCAATGATAAATTTCTCATATTTGCCTCTGATGGGCTCTGGGAACACTTGACAAATCAGCAAGCAGTTGAGATTGTGCATAATAACCCTCGTGCAGGCATTGCGAGGAGACTTCTTACAACGGCTTTAAACGAGGCAGCTAGGAAGAGAGAGATGAGATACGATGATCTTAAGAAGGTTGGAAAGGGAGTCAGGCGGTTCTTTCATGATGATATTACAGTTGTTGTAATCTATTTAGACCATGAGGTGCTGAGGAAAAATTTTTCTGTACCGGAGCTGTCAGTTCGAGGATTCATCGACACCGTTGGGCCATCGAATTTTAATACCCTGCAAGGGATTGATTCGAAGACAATGTCATGA 1173 0.4706 MFSWLARLALACWGPLARRYAPMSKDDDNSGSGANDALIWCRDLEKHSFGEFSFAVVQANEVIEDHSQVETGRDATFVGVYDGHGGPEASRFISDHLFLHLMRLARENGTMSEDILRSAFSATEDGFLTLVRRTCGIKPVIAAIGSCCLVGVIWRGTLYVANLGDSRAVIGCLGRSNKIIAEQLSREHNASMEEVRQELRSLHPDDSHIVVMKHGVWRIKGIIQVSRSIGDAYLKRPEFSLDPSFPRFHLPEPIRRPVLTAEPSICTRVLQPNDKFLIFASDGLWEHLTNQQAVEIVHNNPRAGIARRLLTTALNEAARKREMRYDDLKKVGKGVRRFFHDDITVVVIYLDHEVLRKNFSVPELSVRGFIDTVGPSNFNTLQGIDSKTMS* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1433 390 Gene3D - 35 359 IPR036457 -
Vvi8g1433 390 ProSitePatterns PPM-type phosphatase domain signature. 77 85 IPR000222 GO:0043169
Vvi8g1433 390 PANTHER PROTEIN PHOSPHATASE 37 349 IPR015655 GO:0004722|GO:0006470
Vvi8g1433 390 CDD PP2Cc 49 350 IPR001932 -
Vvi8g1433 390 ProSiteProfiles PPM-type phosphatase domain profile. 51 350 IPR001932 -
Vvi8g1433 390 FunFam Probable protein phosphatase 2C 42 42 358 - -
Vvi8g1433 390 Pfam Protein phosphatase 2C 70 318 IPR001932 -
Vvi8g1433 390 SUPERFAMILY PP2C-like 55 351 IPR036457 -
Vvi8g1433 390 SMART PP2C_4 43 348 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1433 Vvi-Chr8 20244494 20247931 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1433 1 381 PP2C-type Phosphatase Gene Family AT5G06750 71.684 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1433 K01102 - vvi:100258978 789.26