Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1423 ATGGATGGAACTGATATTGGAACAAGCAGTACTCTGGCTGAAGATGATATGGAGGTAAAACCTCTTAGTTCACAAGTCTTGGAATTTGACATAGTAATTCCCTCTGTTGATAATGCACAACCTAATATTTCTTTAGAAGAAGAAGCTGGCATGGATATGGTACCAAAAATTGGAATGGAGTTTGAATCTGATGATCAAGCATATGAATTTTACAGTAATTATGCTAGATTGACAGGGTTTACTGTTAGGAATAATCATTTAGACAAGAGTGAGATGAATGGTGAAGTGCTAGCAAGAAGGTTTCCTTGCTCTAAAGAAAGTTTTGTACAGAATGACAAATATGGTGCTAATGCGAGGAAACGTAGGAAGGAAAGGAAAACCGGTTGCTTGGCACAAATGGTCGTTTCTCGCCAATCCAATGGTAAATATGCTGTCATCCATTTTGAAGCTAAACACAATCATGAAGTTAGGGCCCCAGATGAAGCCTGCAGTGTACCACCAGAAGGGAGATTAACTGATGCTCAAGCTGCTGGTGTTGACTCAGAGGATAGTTTTAGGAGACACTCAGAATCAGCCTTTGACTATAACAACCATTTGCATTCTAGGAGGAGAAGAGAAATGAAGGAAGGAGAGGAAATAATTTTGTTGGATTGTCTACAGAAGCGGCAATTGGAAGATCCGTCATTCTTTTATGAAGTGCAACATGATATTGATGATTATATAACCAACATATTTTGGGCTGATAAACAGATGATTGTGGACTATGGCCAGTTTGGTGATGTGGTTTGCTTCGATACAACTTTCAGAACTAACAAAGATTGCCAACCATTAGTGCCATTTGTTGGTGTGAATCATCACAAGCAAGTAGTTATATTTGGTGCTGCACTTTTATATGATGATACTATTGGATCTTTTGAGGTACTATTTCAAACATTTATGACAGCAATGTCTGGACAGAAGCCAAAGACAATTCTCACAGATCAACATGCAGCAATTAGTGAAGCGATCAATTTGGTGATGCCAGAAACAAATCATCGTATATGTATCTGGAATATATACCACAATGCTCTTTTACATCTAAGCCATGCGTTTGATGGCCCAGGCTCTTTTTCCAGAGATTTTAGCAGCTGCATTTATGATCATGAAGATAAAGAGGACTTCATTCAGGCGTGGAAGGTAATGTTGGATACACACAATCTTCGGAAAAATAAGTGGTTGAAGGGGATATTTGATGAAAGAGAGAAATGGGCTATTGCCTATGGAAGGCATACTTTTTACGCAGATCTAAAAAACTCAGAGTTAATTAACAGTTTTAATAGAAACTTGATGGATCACTTAAACCCTGACCTAGATATATTGCAAACTTTTGAGCATTTCGAAAGGATGGTGTCTGATCTACGTTGCAAAGAATTAGAAGCTAGTTATGACATATTTGAACAGTTGCCATCATTGTTGGGGAATGTGATATTGTTAAAGCATGCGAGGGATGTTTATACACCAGAAGTCTTTGAAGTGTTTCAACGAGAATATGAGAAGTGTCTGAATCTGGTTGTTAATGAGTGTGGTTCAAGTGGATCTTTATTTGAGTACAAGGTAAACATATATGAACATTCTCGAGAGCATAAAGTTACATTTAATCCATCAAATGATACAGTAGTCTGCAGTTGTATGAAGTTTGAATTTGATGGAGTTTTGTGCAGCCATGCTTTAAAAGTGCTTGACCAAAGGAACATTAAGGTAGTTCCAACACAATACATGTTAAATAGGTGGACAAAAGATGCAAGGGTTGGAAGTGTAAGAGATGGTCATGGGTCTATCATAGAAGAAGACCCTATGTTGGCTGCAGCAGACAATTTTAAAATCTTGTGCCATAAGGCAGTTAAAATGGCAGCTGTGGCTGCTGAATCTGGAGAAGCATATCAACATGTTAACATAAGATTCGATGAGATAATGCAAGGCTTGGAGAAGATTTCAAAGATAAAGGCCCTTATGGATATTCAGGTAGCAGAGAACTCTGGTCGATTTGATGGAGATGGAGATGTGTATTTTAGAGATGAACCTGCTTTCCCTGGAGGTTCTTCGATGAGTACAAGTGATTTTATATCCACTGGCTTCACAACTTCCCCAGATTACTTGATGCTTCAACATGGCGCTATGGCCCCAAGGGCCCAAGGACCCTCTGCAATGCTTGTGGGCTTCGGTATAAGAAGGAACACATAA 2220 0.3878 MDGTDIGTSSTLAEDDMEVKPLSSQVLEFDIVIPSVDNAQPNISLEEEAGMDMVPKIGMEFESDDQAYEFYSNYARLTGFTVRNNHLDKSEMNGEVLARRFPCSKESFVQNDKYGANARKRRKERKTGCLAQMVVSRQSNGKYAVIHFEAKHNHEVRAPDEACSVPPEGRLTDAQAAGVDSEDSFRRHSESAFDYNNHLHSRRRREMKEGEEIILLDCLQKRQLEDPSFFYEVQHDIDDYITNIFWADKQMIVDYGQFGDVVCFDTTFRTNKDCQPLVPFVGVNHHKQVVIFGAALLYDDTIGSFEVLFQTFMTAMSGQKPKTILTDQHAAISEAINLVMPETNHRICIWNIYHNALLHLSHAFDGPGSFSRDFSSCIYDHEDKEDFIQAWKVMLDTHNLRKNKWLKGIFDEREKWAIAYGRHTFYADLKNSELINSFNRNLMDHLNPDLDILQTFEHFERMVSDLRCKELEASYDIFEQLPSLLGNVILLKHARDVYTPEVFEVFQREYEKCLNLVVNECGSSGSLFEYKVNIYEHSREHKVTFNPSNDTVVCSCMKFEFDGVLCSHALKVLDQRNIKVVPTQYMLNRWTKDARVGSVRDGHGSIIEEDPMLAAADNFKILCHKAVKMAAVAAESGEAYQHVNIRFDEIMQGLEKISKIKALMDIQVAENSGRFDGDGDVYFRDEPAFPGGSSMSTSDFISTGFTTSPDYLMLQHGAMAPRAQGPSAMLVGFGIRRNT* 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1423 739 ProSiteProfiles Zinc finger SWIM-type profile. 530 577 IPR007527 GO:0008270
Vvi8g1423 739 SMART 26again6 552 579 IPR006564 GO:0008270
Vvi8g1423 739 Pfam MULE transposase domain 261 355 IPR018289 -
Vvi8g1423 739 Pfam FAR1 DNA-binding domain 69 156 IPR004330 -
Vvi8g1423 739 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 44 655 IPR031052 GO:0006355
Vvi8g1423 739 Pfam SWIM zinc finger 549 575 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1423 Vvi-Chr8 20190594 20196180 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi8g1423 MULE 2.7e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1423 - K17604 vri:117920207 1438.32