Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1422 ATGGATACTCGTAAGCGAGGCAGGCCTGGAGGTGCGCTCAACGCTAACGGTGGATTCAAGAAATCCAAGCAAGAAGTGGAGTCCTTATCAACTGGTATAGGAAGCAAATCGAAGCCATGCACCAAGTTTTTCAGCACCTCTGGCTGTCCTTTTGGGGAGAGCTGCCACTTCCTCCACTATGTCCCTGGTGGCTACAATGCCGTGGCTCAGATGACCAATCAGGCACCGATTCTTCCTCCAGCCTCGAGAAACATGGCAGGGCCACCACCTCCTGTTCCAAACGGCTCCTCCATGCCTGCTGTTAAGAGTAAAATGTGCAACAAATTCAACACTGCAGAAGGCTGCAAATTTGGTGACAAATGTCATTTTGCCCATGGTGAATGGGAGCTTGGCAAGCCACTTGCTCCATATCATGATGATCCTCGAGCCATGGGATCCATCCCAGGCCGCTTAGCTGGTCGAATTGAACCGTCACCAACAGGCCCTGCTGCTAGCTTTGGTGCCTCAGCCACTGCCAAAATTAGCGTAGATGCATCGTTGGCTGGAGCCATCATTGGGAAGGGCGGTGTGAACTCGAAGCAGATATGTCGCCAAACAGGGGCCAAACTTTCCATACGGGAGCATGATTCAGATCCAAATCTGAGGAATATTGAACTGGAGGGGACTTTTGAACAGATAAAAGAAGCGAGTGCAATGGTAAGAGAACTAATTGTGAACATCAGTGCAATGCCAGGGCATGCAAGAACAACTGCAATGCCAGGTGGTGGCCAAGCCCCTCCGGCCAGCAACTACAAGACTAAGTTGTGCGACAATTTTACAAAAGGGTCATGCACCTTTGGAGAAAGGTGTCACTTTGCTCATGGGGCTGGTGAGTTGCGCAAATCTGCAATATAA 894 0.5034 MDTRKRGRPGGALNANGGFKKSKQEVESLSTGIGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAQMTNQAPILPPASRNMAGPPPPVPNGSSMPAVKSKMCNKFNTAEGCKFGDKCHFAHGEWELGKPLAPYHDDPRAMGSIPGRLAGRIEPSPTGPAASFGASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIREHDSDPNLRNIELEGTFEQIKEASAMVRELIVNISAMPGHARTTAMPGGGQAPPASNYKTKLCDNFTKGSCTFGERCHFAHGAGELRKSAI* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1422 297 SMART c3hfinal6 263 289 IPR000571 GO:0046872
Vvi8g1422 297 SMART c3hfinal6 102 127 IPR000571 GO:0046872
Vvi8g1422 297 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Vvi8g1422 297 CDD KH-I_AtC3H36_like 172 237 - -
Vvi8g1422 297 SMART kh_6 168 238 IPR004087 GO:0003676
Vvi8g1422 297 ProSiteProfiles Zinc finger C3H1-type profile. 263 290 IPR000571 GO:0046872
Vvi8g1422 297 ProSiteProfiles Zinc finger C3H1-type profile. 100 128 IPR000571 GO:0046872
Vvi8g1422 297 PANTHER CCCH ZINC FINGER/TIS11-RELATED 22 159 IPR045877 GO:0003729
Vvi8g1422 297 MobiDBLite consensus disorder prediction 1 34 - -
Vvi8g1422 297 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Vvi8g1422 297 SUPERFAMILY CCCH zinc finger 99 131 IPR036855 GO:0046872
Vvi8g1422 297 ProSiteProfiles Type-1 KH domain profile. 169 233 - -
Vvi8g1422 297 Pfam RNA-binding, Nab2-type zinc finger 109 126 - -
Vvi8g1422 297 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Vvi8g1422 297 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Vvi8g1422 297 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 160 239 IPR036612 GO:0003723
Vvi8g1422 297 FunFam Zinc finger CCCH domain-containing protein 52 166 262 - -
Vvi8g1422 297 Gene3D - 96 132 - -
Vvi8g1422 297 Gene3D - 261 295 - -
Vvi8g1422 297 SUPERFAMILY CCCH zinc finger 262 293 IPR036855 GO:0046872
Vvi8g1422 297 FunFam Zinc finger CCCH domain-containing protein 258 294 - -
Vvi8g1422 297 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 264 288 IPR000571 GO:0046872
Vvi8g1422 297 Gene3D K Homology domain, type 1 165 260 IPR036612 GO:0003723
Vvi8g1422 297 Pfam KH domain 171 235 IPR004088 GO:0003723
Vvi8g1422 297 FunFam Zinc finger CCCH domain-containing protein 95 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1422 Vvi-Chr8 20182145 20188826 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi8g1422 KH_1 8.1e-13 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1422 - - vvi:100245220 610.912