Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1420 ATGGTCAGGGCTGTCAAACGTGAAGTGGGTAGTAGTAGCAGAGCGAATGCAAACGAAGCCGGAGCGGATAATTCAGGTCACCAAGGTGTGACTGAACGTAGAGTCCTGCGCTCACGGTACCTCGCCGTGAAGAATCAAATTTGCGATGGGAGAGAGGACATTACCAAAGTTGATTCTGATAAGTTTAAGTCGATCATCAATGAGGTTGAAAGCTTGCATCAGCAAGTACAGAAGCCAAGAGAACAGGTTGCAGATGCAGAGGCTCTTTTGGACATCACAAACACCTTAGTAACCTCTGTGAAGGCTCATGGCAATGAAGGAATTACCCCTTCGGATTTTGTATCCTGTCTTCTTCAGGAGTTTGGGCAAAATCCCGGAGTAAGCACTAGTGCTGAGGATGCTGGGAACTCGATTGTTTGGAAGGACATAGGCCTTGTAGTCTCACATATTTTCAAAAGGGCTTCTGGATGTTGCACTATGCTTGGACCTATGAATACTGAAATGAAGCAACGAAAGCCTGTTGTTCATAATAAGCGTGTGAGACCAACCGAAAGTGCTCGGCCTGAAGAGCTTGATGATACTGTCGTGGAAGAGAAATCTGATACTGATAAGAATATGTCAATTATGTTTGATATCTTGAGGAAGAATAGAAGGGTCAGGCTCGAAAATCTCATTTTGAATAGAAACTCCTTTGCCCAGACAGTGGAAAATTTATTTGCTCTGTCATTTCTTGTAAAAGATGGGCGGGCGGAAATAACTGTGGATGGGAGAGGCTGCCATCTAGTTTCACCAAGGAATGCTCCTGCTGCCAATGCCGTTGTCTCAGGGGAGGTCTGTTACAACCACTTTGTCTTCAGATTTGACTTTAAGGATTGGAAGTTGATGGCAACTTCTGTTGGAGCTGGAGAGGAGCTGATGCCGCAAAGGAATTCGGTAAACCTACCTAACAACTCTCAAACAGACTCAGTAGCTGAAGAATGTGAAGCAGCAGCAGCACCTACAACGCCAATTAGGAAGTTGTCTAGGAATCGTGGTCTGGTTTTACAGGAGCAGGCTGTGGTGGAAGACTCACCAGAAAGTGATGATGCAGGAACAAGAGCTGCTGTCATCCGAAAGGGAAAGGGAAAGCGGAAGCTGAGGTGA 1143 0.4584 MVRAVKREVGSSSRANANEAGADNSGHQGVTERRVLRSRYLAVKNQICDGREDITKVDSDKFKSIINEVESLHQQVQKPREQVADAEALLDITNTLVTSVKAHGNEGITPSDFVSCLLQEFGQNPGVSTSAEDAGNSIVWKDIGLVVSHIFKRASGCCTMLGPMNTEMKQRKPVVHNKRVRPTESARPEELDDTVVEEKSDTDKNMSIMFDILRKNRRVRLENLILNRNSFAQTVENLFALSFLVKDGRAEITVDGRGCHLVSPRNAPAANAVVSGEVCYNHFVFRFDFKDWKLMATSVGAGEELMPQRNSVNLPNNSQTDSVAEECEAAAAPTTPIRKLSRNRGLVLQEQAVVEDSPESDDAGTRAAVIRKGKGKRKLR* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1420 380 PANTHER UNCHARACTERIZED 16 363 IPR027786 GO:0005634|GO:0006281|GO:0030915
Vvi8g1420 380 MobiDBLite consensus disorder prediction 352 380 - -
Vvi8g1420 380 MobiDBLite consensus disorder prediction 11 25 - -
Vvi8g1420 380 MobiDBLite consensus disorder prediction 1 31 - -
Vvi8g1420 380 Pfam Nse4 C-terminal 219 305 IPR014854 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1420 Vvi-Chr8 20172950 20175446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1420 2 372 Non-SMC Element family AT1G51130 54.787 6.71e-141 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1420 K22825 - vvi:100255522 745.347