Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1419 ATGGCTTCCAAAGGACCAAGGTCTAAGCTTGATCATGAGACAAGAGCTAGGCGCCAAAAGGCACTTGAGGCTCCTAGGGAGCCCCGTCGTCCTAAAACACACTGGGATCATGTTTTAGATGAGATGGTTTGGCTCTCAAAGGACTTTGAGTCGGAGAGGAAATGGAAATTGGCTCAGGCAAAGAAGGTCGCTTTAAGAGCTAGCAAGGGCATGTTGGATCAAGCCACAAGGGGAGAAAAGAGAGTTAAGGAAGAAGAACAACGTTTGCGAAAGGTTGCACTTACCATTTCAAAGGATGTAAAGAAGTTCTGGATCAAAATAGAGAAGCTGGTGCTTTACAAACATCAAATGGAGCTCGATGAGAAAAAGAAAAAGGCACTTGATAAACAGCTTGAGTTCCTTTTGGGGCAAACTGAGAGGTACTCAACAATGTTGGCAGAGAACCTTGCGGATACATACCAACCAACCCAACAGTATTTACCCAAGGAACGATGTAGTATTCAATATAAAGAAGTGGACGACCCTGGATTTAAAGAAGTACCTCAGTCAGGTATTGCTGATGTTGATGAAGATTATGATATGCAGTCTGAAGAGGAATTGGAAGATGATGAGCATACCATCGAGGAAGATGAGGCCCTCATTACTGAAGAGGAAAGGCAAGAAGAATTGGAAGCACTGCACAATGAGATAGATCTACCGCTTGAGGAGCTGCTCAAACGTTATGCAATGAAGAAAGTTAGCAGTGGTAGTAGTCAAGACAAGGATGAAGAGGAAGCAGAACCAACTTCAGTGGGGGATGATCATTTTGGGGGTGAAGGACAGGATCTGTCTGATACTTGTAAGATTGATAAAAACAGCTCACTCACAGTCATCGGTCGTCGTTGTGGTGAAAGTAATGGTAGCTTATCCATTTCAGAGCACCATTTGTTAGAAGTTGATACATGTCAAGCCAAGAATGTGTCAGAAATTTCTAGGGAGTCAGATGAAGAAAGTAAAGTATATGATTTTAATGATGAACAGGAGGATGGTGACTTTGTTCTTGCAACTGGAGAGGAAAAGGATGATGAGACAACCTTGCTGGAGGAGGAGGAACTTGCAAAAGAAGAATCAAATGATCCCATAGATGAGATCGCTTTACTGCAGAAGGAGAGCGAAATTCCTCTAGAAGAACTGCTGGCAAGGTATAAAAAGGACGCTGATGAAGATGTAGAGGATGATTCTGATTATGCCTCTGCGTCAGAGGACTTCTTGGATTCTCCAGCACATCAGGACACTGAATTGAACCAGCAGCCTGGTTGTGTGGATGATGATGATGACGAACCTGGGGGAAGACAGCCATTTGTGCAGTCTGTGACAGAAGAACATGCAGAAGGTTCTGAAAAACAATCTGATGAAGCAAGGGAGAGTGAGAATCGAATTGCTGATGCAGCTGCTGCCGCAAGATCAGCACAACCCACTGGAAATACCTTCTCAACAACCAAAGTCCGTACAAAGTTCCCATTTCTTCTCAAGCACTCTCTTCGTGAGTATCAACATATTGGCTTGGATTGGCTTGTTACAATGTATGAGAAGAGACTTAATGGGATACTGGCTGATGAAATGGGGCTTGGGAAGACAATTATGACAATTGCTTTGCTTGCACACCTAGCATGTGAAAAGGGAATATGGGGGCCTCATCTCATTGTGGTGCCGACTAGTGTCATGCTGAACTGGGAAACTGAGTTTCTTAAGTGGTGTCCTGCTTTTAAAATTCTTACTTACTTTGGAAGTGCCAAAGAGCGGAAATTTAAGAGACAAGGTTGGTTAAAACCAAACTCTTTCCATGTCTGCATAACCACTTACAGACTTGTTATACAAGATTCAAAAGTTTTCAAGCGGAAGAAGTGGAAATATTTGATTCTGGATGAAGCCCATCTGATTAAAAATTGGAAGTCCCAAAGATGGCAAACTCTTTTAAACTTCAATTCAAAACGGCGCATCTTATTGACTGGTACACCACTGCAGAATGATCTCATGGAACTCTGGTCTCTAATGCATTTCTTGATGCCCCACATCTTTCAATCTCATCAAGAATTCAAAGATTGGTTCTGTAATCCAATATCTGGAATGGTAGAGGGGCAAGAAAAAGTAAACAAAGAAGTCATTGACCGTCTCCATAATGTCCTTCGTCCTTTCCTACTCCGTCGATTGAAAAGGGATGTGGAGAAGCAGCTCCCCATGAAATTTGAACATGTCATATACTGTAGGCTCTCTAAGAGGCAGCGTAACTTGTATGAAGACTTCATTGCCAGTTCAGAGACACAAGCTACTCTAGCCAGTGCCAACTTCTTTGGGATGATTAGTGTCATAATGCAACTGCGCAAAGTTTGCAATCATCCTGATTTATTTGAGGGCCGTCCAATTGTAAGTTCTTTTGATATGGGCGGTATTGACATCCAATTGAGTTCTTCTGTTTGTTCAATGCTTTCACCTGGCCCATTTTCTACTGTAGACCTTAGGGATTTGGGGTTCTTATTTACTCATCTCGATTTCAGCATGGCTTCTTGGGAGAGCGATGAAGTTCAGGCTATTGCTACACCAACGAGCTTAATCAAGGGGCGTGCTGACCCTGATAATCTTGCAGAGATTGGTTTTGGATTCAAACATCAGAGAAAATCCCAGGGAACAAATATTTTTGAAGAGATCAGAAAGGCAATTTTGGAGGTGAGACTGACAGAAGCAAAGGAACGGGCAGCATCTATTGCATGGTGGAATTCCTTGAGGTGTCGTAAGAAACCCATGTACTCAACAACCCTACGGGATCTTGTCACAGTAAAGCATCCTGTTCATGATATCCATCGTCAAAAGAGTGACCGTTTATCATACATGTACTCCTCTAAGCTTGCTGACATTGTCCTGTCCCCTGTTGAACTCTTCAAGAGAATGATTGGTCAGGTTGAATGCTTCATGTTTGCAATCCCTGCAGCACGGGCACCAACACCTGTTTGTTGGTGCAGTAAAACCAATCATTCTGTGTTTCTCCAGCCAACATATAAGGAAAAATGCACTGAAACTTTGTCACCCCTTCTATCGCCTATTAGACCTGCAATTGTCCGCAGGCAAGTGTATTTCCCTGACAGGCGACTCATACAATTTGACTGTGGAAAGCTGCAAGAGCTTGCGGTTTTGCTAAGGAAACTGAAATCAGAAGGCCACCGAGCATTAATATTTACTCAAATGACAAAGATGCTTGATGTCTTGGAGGCTTTTATTAATTTGTATGGCTACACTTACATGCGGTTGGATGGATCTACTCAGCCAGAGGAGAGGCAAACACTAATGCAGAGGTTTAATACCAATCCTAAAATTTTTATTTTTATCTTGTCCACCCGTAGTGGTGGTGTTGGTATTAATCTGGTGGGGGCAGATACAGTTATCTTCTATGATAGTGACTGGAATCCAGCTATGGATCAACAAGCTCAAGATCGATGCCATCGAATAGGACAGACACGTGAAGTGCATATATATCGGTTAATTAGTGAGAGCACCATTGAAGAGAACATCTTAAAGAAAGCGAATCAAAAGCGTGCTCTTGATGATCTAGTCATACAGAGTGGAGGATACAACACTGAATTTTTCAAGAAATTAGATCCTATGGAACTGTTCTCAGGTCACAGGGCACTTCCAAATAAGAATATGCAGAAGGAGAAAAATCATAACATTGGAATTGAGGGTTCTGTATCTGTTGCAGATGTAGAGGCTGCTTTGAAGTATGCAGAAGATGAAGCGGATTATATGGCATTGAAGAAAGTTGAACAGGAAGAGGCTGTGGAAAACCAGGAATTCACGGAAGATGCCATTGGGAGAGTAGAAGATGATGAGTTAGTGAATGAGGATGATATGAAGCCTGATGAGGCTGTGGAGCAGGTTGGCTGTACTACTTCAAGTAAAGACAGTGGATTGATGTTAATTGGGAGTGATCCAAATGAAGAGAGAGCTCTCACTTTTGCTGGTAAAGAAGATGATGTTGATATGCTGGCTGATGTCAAACAGATGGCTGCAGCAGCAGCCGCTGCTGGACAAGCAATCTCATCATTTGAGAGTCAACTTCGTCCAATTGATCGATATGCGATACGTTTCCTGGAGTTATGGGACCCAATCATAGACAAGGCAGCAATGGAATCTCAAGCTACATTTGAGGAGGCAGAATGGGAACTAGATCGGATTGAAAAGTTTAAGGAGGACATGGAAGCTGAAATTGACAATGATGAGGAGCCTTTTGTATATGAAAGATGGGATTCTGATTTTGCAACTGAGGCATACCGACAGCAAGTTGAGGCCTTGGCTCAACACCAGTTGATGGAAGAACTGGAATGTGAAGCTAAAGAAAAGGATGATGCAGATGACGAAAATAATGGTTCTACGAGGAATGATATGGCAAGTGATCCTAAACCCAAGTCAAAGAAGAAACCAAAGAAAGCCAAGTTCAAATCTCTGAAGAAAGGATCTTTAGCTTCTGATTCTAAAGCTGTGAAAGAAGAGCCATTGATGGAACCTATGTCCATAGATGATGAAGATATTTTCCACGGGATGGTCACATTTTCAGACATGATGTCATCACATTCAAGTATGCAGAAAAAGCGTAAAAAGGCTGAAGCAACGGCAGATGGTGAAGAAGATAGGATCATGAAGAAGAGGTCTAAGAAGTTCAAGAAGGCTCCTGAAATAGGTCCTTTAAGTTTTGAAACCAACTTGTCAAATAAGCAGCATGATGAATCTAAAGAATCAAACCCATGTGAGAGTGCTGTTGTTGATCTTGAGCTTAAGTCAGCAAGCAGGGGTAAGATGGGAGGAAAAATCTCCATAACTGTCATGCCAGTGAAGCGGATTCTAATGATCAAACCAGAGAAGTTAAAGAAGGGAAACATTTGGTCAAGAGACTGTGTTCCATCTCCTGATTTTTGGTTTCCGCAAGAGGATGCAGTATTATGTGCTGTTGTACATGAATATGGCCCACATTGGAGCTTGGTGAGTGAAACACTGTATGGGATGACTGCTGGTGGGTTTTACAGGGGGAGATATCGCCATCCTGTCCATTGCTGTGAGAGATTTCGAGAACTCGTCCAAAGATATGTTTTATCTGCACCTGAAAATCCCAATAATGAGAAGGTCAGCAATACTGGCTCTGGAAAGGCTCTTCTCAAAGTAACAGAGGATAACATTCGAATGTTACTAGATGTTGCTATTGACCTGCCAGATAGTGAGTTACTTCTTCAGAAACACTTCACTGCCCTGCTTACTTCTGTCTGGAGGATGACATCCCGTGTTCATCACCGTCAAAACCACCTACCTTATCGAAATGGGCAGTATTCTACTGGAAGGTTTTTCAGTTCTACTGTCAACCAAATTTCTTGGAATTCCGTCAGGGAACCAACAGAAAGGACGAACTGGAATAATTTTGGTTACAGTAGCAGCAGGTTAGTAGCAGCTGCTCTCCATGATGCAAACAATAAACAACATGATGACTCAGCCTTCCTATCTAACCGAAGGGAGGAAGTCTCAACTGTTCCAGAGCAGCTGGAAATAAGGCTGGAAATTGAGAGAGATTTCTGTGATTCCATGATTCCCTTGCCATCTGTCATAAATTTATCAATATTGGGCTCAGAGCCACCATCAGCTGTCAACAACCCTATAGAAGAAAGTCAGATTCTCAAGTCTTCACAGGATATGGCTGAGAACCGTTTCAGGGCCGCATCAAGAGCTTGTTTTGATGGTACTCTGGATTGGGCTTCATCAGCCTTCCCAACAAGTGATATTAAGCCGAGATCTGCAATAAAATCACATTCCTTGGGAAAGCACAAAATCTGTACCTCTGACTCTATCAGGCCTTCTAAATCAAAGTTCAAAAAGGTTGCAGTTGAGCCTAGTGAGATGCACCACCTTATTTTGTCACCACTACCGAAGCCAACAGTTGCATTCAATGATTCCAATCCAAGGTTTGATCTGGGATCACCCGTGAGTTTGGACGCTGGTATCTCCACTCCTTCCTTCAATGAGGAGCTTTGTTGGGAACCTGAGAGTTTGGAGCTGTTCTCGCATCACTATTCTCCTAACCTCATCTCGGACCTTGATGATTTTTCATTGTTGCCAGAATATATCGACATTGGGTAG 6150 0.4265 MASKGPRSKLDHETRARRQKALEAPREPRRPKTHWDHVLDEMVWLSKDFESERKWKLAQAKKVALRASKGMLDQATRGEKRVKEEEQRLRKVALTISKDVKKFWIKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLADTYQPTQQYLPKERCSIQYKEVDDPGFKEVPQSGIADVDEDYDMQSEEELEDDEHTIEEDEALITEEERQEELEALHNEIDLPLEELLKRYAMKKVSSGSSQDKDEEEAEPTSVGDDHFGGEGQDLSDTCKIDKNSSLTVIGRRCGESNGSLSISEHHLLEVDTCQAKNVSEISRESDEESKVYDFNDEQEDGDFVLATGEEKDDETTLLEEEELAKEESNDPIDEIALLQKESEIPLEELLARYKKDADEDVEDDSDYASASEDFLDSPAHQDTELNQQPGCVDDDDDEPGGRQPFVQSVTEEHAEGSEKQSDEARESENRIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKHSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVIDRLHNVLRPFLLRRLKRDVEKQLPMKFEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMGGIDIQLSSSVCSMLSPGPFSTVDLRDLGFLFTHLDFSMASWESDEVQAIATPTSLIKGRADPDNLAEIGFGFKHQRKSQGTNIFEEIRKAILEVRLTEAKERAASIAWWNSLRCRKKPMYSTTLRDLVTVKHPVHDIHRQKSDRLSYMYSSKLADIVLSPVELFKRMIGQVECFMFAIPAARAPTPVCWCSKTNHSVFLQPTYKEKCTETLSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAVLLRKLKSEGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFIFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRALPNKNMQKEKNHNIGIEGSVSVADVEAALKYAEDEADYMALKKVEQEEAVENQEFTEDAIGRVEDDELVNEDDMKPDEAVEQVGCTTSSKDSGLMLIGSDPNEERALTFAGKEDDVDMLADVKQMAAAAAAAGQAISSFESQLRPIDRYAIRFLELWDPIIDKAAMESQATFEEAEWELDRIEKFKEDMEAEIDNDEEPFVYERWDSDFATEAYRQQVEALAQHQLMEELECEAKEKDDADDENNGSTRNDMASDPKPKSKKKPKKAKFKSLKKGSLASDSKAVKEEPLMEPMSIDDEDIFHGMVTFSDMMSSHSSMQKKRKKAEATADGEEDRIMKKRSKKFKKAPEIGPLSFETNLSNKQHDESKESNPCESAVVDLELKSASRGKMGGKISITVMPVKRILMIKPEKLKKGNIWSRDCVPSPDFWFPQEDAVLCAVVHEYGPHWSLVSETLYGMTAGGFYRGRYRHPVHCCERFRELVQRYVLSAPENPNNEKVSNTGSGKALLKVTEDNIRMLLDVAIDLPDSELLLQKHFTALLTSVWRMTSRVHHRQNHLPYRNGQYSTGRFFSSTVNQISWNSVREPTERTNWNNFGYSSSRLVAAALHDANNKQHDDSAFLSNRREEVSTVPEQLEIRLEIERDFCDSMIPLPSVINLSILGSEPPSAVNNPIEESQILKSSQDMAENRFRAASRACFDGTLDWASSAFPTSDIKPRSAIKSHSLGKHKICTSDSIRPSKSKFKKVAVEPSEMHHLILSPLPKPTVAFNDSNPRFDLGSPVSLDAGISTPSFNEELCWEPESLELFSHHYSPNLISDLDDFSLLPEYIDIG* 2050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1419 2049 Coils Coil 1392 1412 - -
Vvi8g1419 2049 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 1014 1268 - -
Vvi8g1419 2049 MobiDBLite consensus disorder prediction 244 281 - -
Vvi8g1419 2049 SMART ultradead3 503 696 IPR014001 -
Vvi8g1419 2049 MobiDBLite consensus disorder prediction 1454 1478 - -
Vvi8g1419 2049 Gene3D - 753 814 - -
Vvi8g1419 2049 PANTHER HELICASE SRCAP-RELATED 15 1942 - -
Vvi8g1419 2049 Gene3D - 476 752 IPR038718 -
Vvi8g1419 2049 MobiDBLite consensus disorder prediction 172 208 - -
Vvi8g1419 2049 Gene3D - 1020 1268 IPR027417 -
Vvi8g1419 2049 Pfam SNF2-related domain 524 796 IPR000330 GO:0005524|GO:0140658
Vvi8g1419 2049 MobiDBLite consensus disorder prediction 1 33 - -
Vvi8g1419 2049 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 753 818 - -
Vvi8g1419 2049 Pfam HSA domain 27 93 IPR014012 -
Vvi8g1419 2049 Coils Coil 200 220 - -
Vvi8g1419 2049 MobiDBLite consensus disorder prediction 355 370 - -
Vvi8g1419 2049 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 519 684 IPR014001 -
Vvi8g1419 2049 MobiDBLite consensus disorder prediction 1531 1554 - -
Vvi8g1419 2049 Pfam Helicase conserved C-terminal domain 1049 1161 IPR001650 -
Vvi8g1419 2049 MobiDBLite consensus disorder prediction 190 208 - -
Vvi8g1419 2049 SMART bromneu2 23 94 IPR014012 -
Vvi8g1419 2049 SMART helicmild6 1078 1161 IPR001650 -
Vvi8g1419 2049 ProSiteProfiles Myb-like domain profile. 1648 1701 IPR001005 -
Vvi8g1419 2049 MobiDBLite consensus disorder prediction 1454 1515 - -
Vvi8g1419 2049 MobiDBLite consensus disorder prediction 321 375 - -
Vvi8g1419 2049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 731 1217 IPR027417 -
Vvi8g1419 2049 Gene3D - 1645 1705 - -
Vvi8g1419 2049 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1049 1202 IPR001650 -
Vvi8g1419 2049 MobiDBLite consensus disorder prediction 454 474 - -
Vvi8g1419 2049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 729 IPR027417 -
Vvi8g1419 2049 MobiDBLite consensus disorder prediction 1571 1592 - -
Vvi8g1419 2049 Coils Coil 1443 1463 - -
Vvi8g1419 2049 MobiDBLite consensus disorder prediction 1535 1554 - -
Vvi8g1419 2049 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Vvi8g1419 2049 Coils Coil 1534 1554 - -
Vvi8g1419 2049 FunFam Photoperiod-independent early flowering 1 477 752 - -
Vvi8g1419 2049 MobiDBLite consensus disorder prediction 249 279 - -
Vvi8g1419 2049 CDD DEXQc_SRCAP 507 729 - -
Vvi8g1419 2049 CDD SF2_C_SNF 1037 1172 - -
Vvi8g1419 2049 MobiDBLite consensus disorder prediction 1493 1515 - -
Vvi8g1419 2049 MobiDBLite consensus disorder prediction 418 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1419 Vvi-Chr8 20149414 20170260 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1419 527 799 RAD5 or RAD16-like Gene Family AT5G43530 29.814 1.54e-27 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi8g1419 SNF2_N 8.4e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1419 - - vvi:100248703 3956.37