Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1414 ATGGAGGATTTGAAGAAGAGGAAGCTCGAAGAGGCCAGTAACGGTCAGATCTCTTCTTCACCGGAAGAGTTGAAATTACTGCTTGACCCGCTTTCCAAATCCCAGTTGGTTGATCTTCTCTCCAAACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATTAAAAGTGTTGCCAGTGCAGATCCTGTCCACCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACTACTTCAGAAACCTTGTGTGCTGCTTTTCGACTTCATGGAGAAATTGAAGAAGGTGCTGTGATTGTTGATAAAACAACAGGGAAATCACGTGGATATGGGTTCATTACTTACAAACATATGGAATCAACTCAGAGTGCTCTGCAAGCACCTAGCAAATTGATTGATGGCCGCATGGCTGTTTGTAATTTAGCATGTGAGGGCTTAAGTGGGGCAAGTACTACACCTGATCAAGCCCAAAGGAAGCTCTACATTGGGGGCTTGGCTCCAGATGTCACAAGTGAGGTGCTGCTCAGTTTTTTTGGGAGGCATGGTGAGATAGAAGAAGGTTCGGTTGCATATGATAAAGAAACAAATGAATCACGTGGTTTTGGCTTTGTTACATACAAAACAGTTGAGGCTGCAAAGAAGGCCATTGATGATCCACAAAAGTTCCTTGGGGGGCGGAGTATCATCGTGAAGCTAGCTGATTCACACAAGGGCAAGATGATACAAGCACAGCTATCAACAGCAGTGGTTCCAATAGCTTTACCTTTGGCAGCTGGATACCCACAGCAGCCTGGAAAACCACCTGCCAGTGCCACTCCTGTTGCCTACACTTACCCTCAAGCTGGAGCAACATACCCTGCTTACCCTGGTCCTCCCACAGGACCAGCTCCATACTCATCCACAGCACCTGCTCCATATCCATCTCAACCTCAAATGCCTTACTCATCAGCCACTGTAATGAAAGACCCACTCGGCCTACCTCCAACGCCAACTGTGGGAATGGGAGGATACCCTTACTACTTTGCCAAACAATGA 1029 0.4674 MEDLKKRKLEEASNGQISSSPEELKLLLDPLSKSQLVDLLSKLGSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRLHGEIEEGAVIVDKTTGKSRGYGFITYKHMESTQSALQAPSKLIDGRMAVCNLACEGLSGASTTPDQAQRKLYIGGLAPDVTSEVLLSFFGRHGEIEEGSVAYDKETNESRGFGFVTYKTVEAAKKAIDDPQKFLGGRSIIVKLADSHKGKMIQAQLSTAVVPIALPLAAGYPQQPGKPPASATPVAYTYPQAGATYPAYPGPPTGPAPYSSTAPAPYPSQPQMPYSSATVMKDPLGLPPTPTVGMGGYPYYFAKQ* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1414 342 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 233 IPR000504 GO:0003723
Vvi8g1414 342 SMART rrm1_1 157 229 IPR000504 GO:0003723
Vvi8g1414 342 SMART rrm1_1 66 138 IPR000504 GO:0003723
Vvi8g1414 342 SUPERFAMILY RNA-binding domain, RBD 59 142 IPR035979 GO:0003676
Vvi8g1414 342 SUPERFAMILY RNA-binding domain, RBD 152 238 IPR035979 GO:0003676
Vvi8g1414 342 Gene3D - 146 248 IPR012677 -
Vvi8g1414 342 FunFam UBP1-associated protein 2C-like 61 142 - -
Vvi8g1414 342 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 57 133 - -
Vvi8g1414 342 CDD RRM2_NsCP33_like 157 231 - -
Vvi8g1414 342 Gene3D - 44 145 IPR012677 -
Vvi8g1414 342 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 156 IPR000504 GO:0003723
Vvi8g1414 342 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 225 IPR000504 GO:0003723
Vvi8g1414 342 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 133 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1414 Vvi-Chr8 20073515 20077987 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1414 148 257 C2H2 Transcription Factor Family AT2G19380 37.273 2.94e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1414 K12741 - vvi:100243489 612.068