Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1413 ATGAACCGTTTTCAGAAACTCAGAACGAAGAGTGTTTTCAAATGGGTTTCTCTAAATTTCTCAGAAAACCTCCTCAAATCGTCAAAAGCCCCATTTTTGGGTGCTGGGTCATTTCGCATTAGGCAAAACCCTAGATTTTATGGAAGAAAAACAAGCGCTGAATCCGAAAATTTTCAAAGTCCGGTGGAAACCTCGACCGTTGATTTTGAAAATGTTGGCCATATTTCTCGGACAACCAGGGCGCAAGCTCAAGCCGCATTGTTGGAATACTTGCACTGTACTAGGTCCTTACAGTTTATGGATGCAGAGAATATGAGTAAAAATTCTCCATTTTTTCTTGAAAAGATTTTGGGAAAGGTAAAAAATGAAGCAGAGATAGGGAAGTCCATAACCAGGTTCTTGCGGTACCACCCCATTAATGAGTTTGAACCATTCTTCGAAAGTTTGGGTTTAACACCTTCTGAGTTTACAAATCTTCTTCCACGGAATTTGATGTTTTTGTGTGATGATCAGGTGTTGTTAGAGAATTATTATATTTTGTGTAATTATGGGATAGCTCGGAATAAGATAGGAAAGATTTACAAGGAAGCACCAGAGGTTTTCAGATATGATTCTGGGATTTTGCGGTTGAAGCTTCAAGCTTACCTAGAACTGGGGTTAAGCCAATCTACTATGATAAAGGCTATTGCTTCAAGTCCATATCTTTTGATTGGAGATGCCAATATGGATTTTGTTAAGGCTATGGAAAAGTTGAAGAGTGTGGGGATCGAATCCAATTGGATTGAGAAGCATTTATCAGAGGGAAATTATTATGATTGGAGCCAAATGGTTGGACTTCTATGCTTATTTAGCAAAATGGGTTTCAATGGAGAGCAGTTAGGTGAATTGATAAGACAACACCCTGGGATTCTGCTTGAGTGTTCAGGGAATTTGGCACATTCTTTAGTTGGGTTATTGTTGAAGTTTGGTTTCACCACGAATGAGATATATATATTTTTTCTGCAGTTCCCACCAATTGAATTTGGGAAGTTCTATAGGAATTTCAGGCACTGCTATCTATTTCTGATTGAGATTGAGTTGGAGGTTGAGGAGATTGGCAGAATTGTTCGTTCTCACACTGTGCTGCTGGGTTCATGTGCACTGAAGAGAGTTAACAGTTTACTTGCTAACTTGAATATTGGGAAGAAGCGACTTTGTGGAATTATCAAGGATAATCCACAAGAGTTGAAGAAGTGGGTTTTGGGATCGAGGGTTGGACCATTACCAAACTTAGGGGAAGACCTAAGATCACAGCTACAGAAGACCAAGTTCTTGTCAGACTTGGGATATGTTGAGAACACAAAGGAAATCGAAAAGGCACGCAAGCTATTCCGAGGCAAAGGAATGGAGCTTCAAGAGAGATTTGATTTTCTTATGAAAGCTGGTTTGGATAGAAAGGATGTCTCCGAGATGATCAAAGTAGCCCCTCAAATTCTGAACCAATCAACTGATGTGATTGAAATGAAGATTGATTATTTAATACATGCTTTGGGTTATCCCATATCGTCTTTAGTGACATTCCCTTCTTATCTTTCCTATACGACTGAAAGGGTTGAGCTTAGGATGTCTATGTATAATTGGCTCAAAGATCAAGGAGTGGCAGAACCCAATTTGGCATTGAGCACTATTATTGCTTGTTCAGATAATTATTTTATAGACCGTTATGTAAATCGTCACCCCAAAGGAGCTGAAATTTGGGAGAAGTTGAAGCAAAAAATTTATTCAAATTAA 1770 0.3881 MNRFQKLRTKSVFKWVSLNFSENLLKSSKAPFLGAGSFRIRQNPRFYGRKTSAESENFQSPVETSTVDFENVGHISRTTRAQAQAALLEYLHCTRSLQFMDAENMSKNSPFFLEKILGKVKNEAEIGKSITRFLRYHPINEFEPFFESLGLTPSEFTNLLPRNLMFLCDDQVLLENYYILCNYGIARNKIGKIYKEAPEVFRYDSGILRLKLQAYLELGLSQSTMIKAIASSPYLLIGDANMDFVKAMEKLKSVGIESNWIEKHLSEGNYYDWSQMVGLLCLFSKMGFNGEQLGELIRQHPGILLECSGNLAHSLVGLLLKFGFTTNEIYIFFLQFPPIEFGKFYRNFRHCYLFLIEIELEVEEIGRIVRSHTVLLGSCALKRVNSLLANLNIGKKRLCGIIKDNPQELKKWVLGSRVGPLPNLGEDLRSQLQKTKFLSDLGYVENTKEIEKARKLFRGKGMELQERFDFLMKAGLDRKDVSEMIKVAPQILNQSTDVIEMKIDYLIHALGYPISSLVTFPSYLSYTTERVELRMSMYNWLKDQGVAEPNLALSTIIACSDNYFIDRYVNRHPKGAEIWEKLKQKIYSN* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1413 589 FunFam mTERF family protein 119 270 - -
Vvi8g1413 589 PANTHER CGI-12 PROTEIN-RELATED 84 256 IPR003690 GO:0003690|GO:0006355
Vvi8g1413 589 SMART mt_12 191 221 IPR003690 GO:0003690|GO:0006355
Vvi8g1413 589 SMART mt_12 447 477 IPR003690 GO:0003690|GO:0006355
Vvi8g1413 589 SMART mt_12 482 513 IPR003690 GO:0003690|GO:0006355
Vvi8g1413 589 SMART mt_12 514 547 IPR003690 GO:0003690|GO:0006355
Vvi8g1413 589 SMART mt_12 226 257 IPR003690 GO:0003690|GO:0006355
Vvi8g1413 589 FunFam Transcription termination factor MTEF18, mitochondrial 315 582 - -
Vvi8g1413 589 Gene3D Transcription termination factor 3, mitochondrial 315 584 IPR038538 -
Vvi8g1413 589 Gene3D Transcription termination factor 3, mitochondrial 119 267 IPR038538 -
Vvi8g1413 589 Pfam mTERF 97 258 IPR003690 GO:0003690|GO:0006355
Vvi8g1413 589 Pfam mTERF 282 440 IPR003690 GO:0003690|GO:0006355
Vvi8g1413 589 Pfam mTERF 433 564 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1413 Vvi-Chr8 20070511 20072280 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi8g1413 mTERF 2.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1413 - - vvi:100241837 1170.61