Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1411 ATGGAAAGGGGTTCGAGCTCTTTGACCGTTTCCAGCTCTTCGGCCAACTCGTCTGAGTCGCTCAACGGGTTGAAATTTGGGCAGAAGATATATTTTGAAGATTTGGGTGTTGGAGCTCCGGCCAAATCGGGAACCGGGTCCTCCTCCTCCTCCTCTGCCGCCGGCTCCGGTGGTCGCCCACCTCCGGCGCCACCAAAGAAGGTAAGAGGTAGTGGGGTTGTTCAGGGAGGCCAACCACCGAGGTGTCAAGTTGAAGGGTGTAAAGTAGATCTGAGTGATGCCAAAGCTTACTATTCAAGGCATAAAGTGTGTGGTATGCATTCGAAGTCTCCAACGGTCATTGTTGCGGGCCTTGAGCAGAGGTTTTGCCAGCAGTGTAGCAGATTTCATCAGCTTGCCGAATTTGACCAAGGAAAACGAAGTTGTCGTAGGCGCCTGGCTGGTCATAATGAGCGTCGCAGGAAGCCACCACCTGGATCTTTATTGTCCTCACGCTATGGGCGACTTTCTTCATCCATTTTTGAAAACAGCAGCAGGGTGGGAGGAGGCTTTCTGATGGACTTTGCTGCATACCCAAGGCATCCCGAGAGGGATACTTGGCCAACTACAAGAGCATCTGATCGGGTACCTGGAAATCAAACCACTGCGATGGGAAGGTTTCTTCCACATCCATGGCAGAGCAACTCTGAGAATCCTCTCTTTCTGCAAGGTTCAGCAGGCGGGACCAGCTTTCATGGTCCTGGAATTCCTTCAGGAGAATGTTTCACAGGGGCCTCCGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAATCAGCCATGGAGCTCCAGGAATCGAGCATCTGGTCTTGGAGCAAACAGCTTCATGAATCCTGAAGGGGCATCCATGGCGCAACCCACAGCTCCTCATAGTGCAGCTATCAATCACTTCCCAAGCACCTCGTGGGATTTCAAGGGCAATGAAGGTAGTAGCAGTTCGCAGGAGATGCCACCTGATCTTGGTCTTGGTCAAATTTCACAGCCTATTAATAGCCAGTTCTCAGGTGGGGGCGAGTTGCCCCAACAGAGTGGAAGGCAATACATGGAACTCGAGCACTCCAGGGCTTATGACTCTTCCACTCAGCAGATGCACTGGTCACTTTAG 1140 0.5202 MERGSSSLTVSSSSANSSESLNGLKFGQKIYFEDLGVGAPAKSGTGSSSSSSAAGSGGRPPPAPPKKVRGSGVVQGGQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPTVIVAGLEQRFCQQCSRFHQLAEFDQGKRSCRRRLAGHNERRRKPPPGSLLSSRYGRLSSSIFENSSRVGGGFLMDFAAYPRHPERDTWPTTRASDRVPGNQTTAMGRFLPHPWQSNSENPLFLQGSAGGTSFHGPGIPSGECFTGASDSSCALSLLSNQPWSSRNRASGLGANSFMNPEGASMAQPTAPHSAAINHFPSTSWDFKGNEGSSSSQEMPPDLGLGQISQPINSQFSGGGELPQQSGRQYMELEHSRAYDSSTQQMHWSL* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1411 379 MobiDBLite consensus disorder prediction 1 21 - -
Vvi8g1411 379 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 356 IPR044817 GO:0003677
Vvi8g1411 379 MobiDBLite consensus disorder prediction 315 353 - -
Vvi8g1411 379 Pfam SBP domain 82 155 IPR004333 GO:0003677
Vvi8g1411 379 SUPERFAMILY SBT domain 80 160 IPR036893 GO:0003677|GO:0005634
Vvi8g1411 379 MobiDBLite consensus disorder prediction 315 354 - -
Vvi8g1411 379 ProSiteProfiles Zinc finger SBP-type profile. 79 156 IPR004333 GO:0003677
Vvi8g1411 379 MobiDBLite consensus disorder prediction 42 56 - -
Vvi8g1411 379 MobiDBLite consensus disorder prediction 41 79 - -
Vvi8g1411 379 FunFam Squamosa promoter-binding-like protein 14 73 143 - -
Vvi8g1411 379 Gene3D - 72 143 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1411 Vvi-Chr8 20046647 20050716 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1411 24 379 SBP-box Gene Family AT2G42200 46.859 1.12e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vvi8g1411 SBP 8.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1411 - - vri:117920776 708.368