Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1409 ATGACGAAACAACATCTGCGGTTATTCCTCATTGTAATTGTGTTTTCGGTGTTCATCACTTTGCAAGCTTCGGCTATTACAGATCCACGGGATGATTACAGAATAATTCCCTCCTTTTTACTTTCTGCAGTGGCAGCTCTTCAAGACTTGTACAAGGAACTGAACTACCCACCACAGTTGGAGAAGTGGAGATCATATGCTGGGGATCCATGTGATGAATCATGGAAAGGAATCTCATGTTCTGGTTCAACTGTCATTTTCATTCAGCTTCCAGGACTAAATCTCGGTGGACATCTTGGAGGCCAGCTCCATAATCTCCATAATTTGAAGCAACTGGATGTTAGCTCCAATAACATTCAAGGTGAAATTCCTTACGGGTTACCCCCTAATGCCACTCATATAAATTTGGCATGCAACAAATTTAGTCAAAATATCCCCAACTCCCTCACTTTCATGAAGAATCTTCGACATCTGAATCTGAGCCACAATTCATTATCTGGACCCATTGGCAATGTGTTTACTGGCCTACAGAATCTAAAAGAAATGGATCTATCACACAATCACTTTACTGGAGATCTGCCAAGTTCATTTGGAACTTTGAAAAATCTTACTAGATTGTTCTTGCAGAATAACAAGTTTACTGGGTCTGTGATCTTCTTGGCTGATCTCCCACTGTCTCACTTGAACATCCAAAGTAACCATTTTAGTGGCATTATTCCAAGGCAATTTCAGTTGATACCAAATTTATGGTTTGGGGGGAATAGATTCCATCCAGGGGGGAACTATCCACCCTGGGATTTCCCTTTGGAAACTGAGCAGAATATTAATAGCCCACCGACAACTGAATCAAGTGCTGTTGAGAACTACCCCTCTAGAAAAGCACATGAACGCAAGAAGAAAAGGCTGGGTCCTGGAGGAATAGCTCTCATGGTTGGTGGAGGAACTCTGTTGGTAAGCTGTGCAGCACTCCTACTTACTGTCCGCATTAATCGAGCTCGTGCACAAACGCACAAAAGCTTGGAGGGCAGTGAAAGCGCACTGCATTGTATTCCAACCACTACAGTCGAAGCAGAAGAGAGCCCACAAATCTTGGCTCTCAGTCCACCAACGTTTATGTCAAGGCCAATTCCCACTGCTCGCAATGTCAGATTTGAGAAAATTTGCTCCAGAAGAAGTTTCTCTAAGAAATCCAGAATCCCAGCAAATGCAAAGCTTTACACTGTGGCAGAGCTTCAACTAGCTACAAACAGCTTCAGTGAAGAGAACCTTCTTGGAGAAGGATCCCTTGGTTCTGTTTACAAAGGAGAGTTTCCTGATGGCCAAGTCATGGCTGTGAAAAACATAAACACAGTCTCACTCTCTCTCCATGAAGAAGAACAATTCTTGGATGTGATATGGACCGCAGCTCGTTTGAGGCATCCAAACATTGTAACACTTCTTGGGTATTGTGTGGAGCACGGACAGCATCTCCTTGTGTACAAGTTTGTCAGAAATTTGTCTCTTGATGATGCACTGCACTGTGAAGTATACAAGCCTCTGTCTTGGAGCCTCCGACTCCAGATTGCCCTCGGCATTGCACGTGCTTTGAACTATTTGCACTCTGTATGTTCACCTCCTATTGCCCATTGCAACCTAAAGGCCGCCAACATCTTACTTGATGAAGAGCTTACACCTCATATCTGTGACACAGGGCTAGCCGTTTTAAGGCCACTTACAAGCAACACTGTTAAACTGAAGGCTTCTGAGATGGCTATTGGCAATTGTGGCTACATTGCACCTGAACATGGCCAGCCTGGAATCGATAACAAGAAGAGTGATGTATATGCCTTTGGAGTGCTGCTTTTAGAGCTACTAACAGGAAGAAGGCCATTCGATAGTTCAAGATCAAGGGAAGAGCAATCTTTGGTGAAATGGGCTTCTGCCCGGCTTCATGACAATGATTCTTTGGGACAGATGGTTGATTCAGGCATCAAAGGAACTTTCTCCTCCAAGGCTCTCTCACAATATGCAGATATTGTCTCTCTCTGCATTCAGCCCGAGAAAGAATTCAGACCACCAATGACGGAAGTTGTGGAATCTGTTAGACGTCTGTTACAAAAGACGAGAAGCAGGTTAATTGAGGGTGGCGAAGTTGAGGTTGAGGGCTTCGATAAATCTTTCCATTCCACGAACACCCGCTTTGTAGGCTCACCATCAATGAGCATTATGTCCGCCTGA 2217 0.4416 MTKQHLRLFLIVIVFSVFITLQASAITDPRDDYRIIPSFLLSAVAALQDLYKELNYPPQLEKWRSYAGDPCDESWKGISCSGSTVIFIQLPGLNLGGHLGGQLHNLHNLKQLDVSSNNIQGEIPYGLPPNATHINLACNKFSQNIPNSLTFMKNLRHLNLSHNSLSGPIGNVFTGLQNLKEMDLSHNHFTGDLPSSFGTLKNLTRLFLQNNKFTGSVIFLADLPLSHLNIQSNHFSGIIPRQFQLIPNLWFGGNRFHPGGNYPPWDFPLETEQNINSPPTTESSAVENYPSRKAHERKKKRLGPGGIALMVGGGTLLVSCAALLLTVRINRARAQTHKSLEGSESALHCIPTTTVEAEESPQILALSPPTFMSRPIPTARNVRFEKICSRRSFSKKSRIPANAKLYTVAELQLATNSFSEENLLGEGSLGSVYKGEFPDGQVMAVKNINTVSLSLHEEEQFLDVIWTAARLRHPNIVTLLGYCVEHGQHLLVYKFVRNLSLDDALHCEVYKPLSWSLRLQIALGIARALNYLHSVCSPPIAHCNLKAANILLDEELTPHICDTGLAVLRPLTSNTVKLKASEMAIGNCGYIAPEHGQPGIDNKKSDVYAFGVLLLELLTGRRPFDSSRSREEQSLVKWASARLHDNDSLGQMVDSGIKGTFSSKALSQYADIVSLCIQPEKEFRPPMTEVVESVRRLLQKTRSRLIEGGEVEVEGFDKSFHSTNTRFVGSPSMSIMSA* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1409 738 Gene3D Phosphorylase Kinase; domain 1 380 495 - -
Vvi8g1409 738 SUPERFAMILY Protein kinase-like (PK-like) 394 692 IPR011009 -
Vvi8g1409 738 Gene3D Transferase(Phosphotransferase) domain 1 496 713 - -
Vvi8g1409 738 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 41 267 - -
Vvi8g1409 738 SUPERFAMILY L domain-like 45 250 - -
Vvi8g1409 738 Pfam Leucine rich repeat N-terminal domain 43 81 IPR013210 -
Vvi8g1409 738 ProSiteProfiles Protein kinase domain profile. 418 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1409 738 Pfam Leucine rich repeat 172 213 IPR001611 GO:0005515
Vvi8g1409 738 SMART LRR_typ_2 200 221 IPR003591 -
Vvi8g1409 738 SMART LRR_typ_2 106 130 IPR003591 -
Vvi8g1409 738 SMART LRR_typ_2 176 199 IPR003591 -
Vvi8g1409 738 SMART LRR_typ_2 152 175 IPR003591 -
Vvi8g1409 738 FunFam Leucine-rich repeat receptor-like protein kinase 496 705 - -
Vvi8g1409 738 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 383 495 - -
Vvi8g1409 738 Pfam Protein tyrosine and serine/threonine kinase 421 693 IPR001245 GO:0004672|GO:0006468
Vvi8g1409 738 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 396 697 - -
Vvi8g1409 738 MobiDBLite consensus disorder prediction 272 288 - -
Vvi8g1409 738 MobiDBLite consensus disorder prediction 272 298 - -
Vvi8g1409 738 Gene3D Ribonuclease Inhibitor 42 269 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1409 Vvi-Chr8 20037653 20042794 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1409 2 738 Strubbelig Receptor Gene Family AT5G06820 58.112 0.0 802
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vvi8g1409 PK_Tyr_Ser-Thr 3.9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1409 - - vvi:100252106 1414.82