Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1403 ATGACAGGTTCAGATGGACCAAGTCGCTTTTGTTCTCTTCTTTTGCAGCATATGCTAGAATCTGCAGAAGGGAAATCTGAGAAAGGGGCCAGCTCCAGTGATGTGCCTCATCTTGATAATGAAGATGGCATGCAGATCAGGGAGGCACTGCAGCTGCAACTTGATCTTCAGAGGCGTCTCCATGAGCAGTACTCAGAGGTTTACGGCTACTTGTGCAAGAGTTCTCCACTTGCACAGCAGGCCCAGTGTGCTACATCTTCTTCTGAGGGTGTTTCTATTGCTTCTGCCGATCCTGTATCCCCAGTTCTTCACAGTAAACCCCGAATCAGGTGGACTCCAGATCTTCATGAGCACTTTGTTGAGTGTGTAAATCGCCTGGGTGGAGCTGAGAAAGCAACCCCAAAAGCCATACTCAAGCTGATGGATTCAGAAGGACTGACCATCTTTCATGTGAAACGCCATTTGCAGAAATATCGGATTGCAAAGCACAAGCCAGGATTTGCAGGAGGGAAATCTGAGAACATGGAAGGCAGTTCATCCGTTTGA 546 0.4799 MTGSDGPSRFCSLLLQHMLESAEGKSEKGASSSDVPHLDNEDGMQIREALQLQLDLQRRLHEQYSEVYGYLCKSSPLAQQAQCATSSSEGVSIASADPVSPVLHSKPRIRWTPDLHEHFVECVNRLGGAEKATPKAILKLMDSEGLTIFHVKRHLQKYRIAKHKPGFAGGKSENMEGSSSV* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1403 181 SUPERFAMILY Homeodomain-like 104 162 IPR009057 -
Vvi8g1403 181 Gene3D - 105 164 - -
Vvi8g1403 181 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 21 63 IPR044848 GO:0003700
Vvi8g1403 181 FunFam Myb family transcription factor 105 163 - -
Vvi8g1403 181 Pfam Myb-like DNA-binding domain 110 159 IPR001005 -
Vvi8g1403 181 NCBIfam myb-like DNA-binding domain, SHAQKYF class 106 161 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1403 Vvi-Chr8 19994070 19995315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1403 99 165 G2-like Transcription Factor Family AT5G06800 77.612 5.00e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi8g1403 Myb_DNA-binding 4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1403 - - vvi:100854426 358.221