Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1401 ATGAGGTTCTCAAGAGCTGCTGCTGAAGAAGAAATAGAAGCAAAGCTTCTTGTGAGTCCTTTCATGGCGACCGCTAGTAAACCCACCAACCACACGAGCCACCTAGAATTACAGCATCAACAACAGCAGCAACAGCAGCACCAGCAAGTGTTGGATCATCATCAGATGTCTTACGGAATGATGCAATCATCGTCATCATCAGCTATGCCTGGAAACTTCTTAAGCAAAGACCCTGGAGCTTATGATTTAGGAGAATTGGATCAAGCCCTTTTTCTCTATCTCGATGGGCATGATCCTTCAGCTATACAAGAGCAAAGACATAACTCAGATATCAGACCTCCAACGCTAAACATTTTCCCCTCTCAGCCTATGCACGTAGAACCACCAATAAAGGCGAGTCTAGGGTTGGTTTCTCCATCAACCAGCGGTTCAAAGAGACCATCAGAGCCATCTATGGAGTTGGCCAACCCAAAAAATGATGCTAATGTTTCTGGGCCTGATCAACCAGCCAAGGCTGTCAAGCGCGAAGGAAACCGCAAAGGTCCAACATCGAGTTCAGAGCAGGAAGGACCCAAAACGCCAGACCCTAAGACACTGAGAAGACTTGCTCAGAATAGAGAGGCAGCCCGGAAAAGCAGGCTAAGAAAAAAGGCTTATGTTCAGCAGCTAGAGTCCAGCAGGATCAAGCTCACACAGCTGGAACAAGAACTACAAAGAGCTAGAGCTCAAGGCCTAATTTTCACTGGTGGAGGACTTTTAGGAGGAGGAGGAGGAGACCAGAATGCTCCTGTGGCTGTGACCAACTTGAGCTCAGATGCCGCCGTCTTTGACATGGAATACGGTAGATGGCTTGAGGAGCACCACCGCCTCATGTGCGAGCTTCGAGCAGCAGTACAAGAGCATTTACCCGAGAACGACCTTCGCCTCTTCGTGGACAACTGCATAGCACACTTCGATGGGATGATGAACCTCAAGAGCATGGTCGCCAAGTCCGATGTCTTTCATCTTGTTTCGGGCATGTGGAAGACTCCGGCCGAACGTTGCTTCATGTGGATGGGTGGTTTCCGCCCATCAGAGGTCATCAAGATCATTCTGAACCAAATTGAGCCCTTAACGGAGCAACAGATCTTGGGGATATGTGGATTACAGCAGTCGACCCAGGAGGCGGAAGAAGCTCTCTCTCAAGGGCTTGAAGCTCTGAATCAGTCTCTCTCAGACACCATAGCTTCAGACTCACTGAGCGCGCCTCCTAACATGGCGAACTACATGGGTCAGATGGCTATTGCCATGAACAAACTCTCTACTCTTGAAGGATTTGTTAGACAGGCGGACAATCTGAGGCACCAGACTATTCACAGGCTGCAGCAAGTCCTGACCACCCGACAAGCGGCAAGGTGTCTGCTGGCCATGGCGGAGTATTTCCACCGCCTCCGAGCTCTCAGTTCTCTCTGGATGGCTCGCCCTCGGCAGGAATGA 1476 0.5014 MRFSRAAAEEEIEAKLLVSPFMATASKPTNHTSHLELQHQQQQQQQHQQVLDHHQMSYGMMQSSSSSAMPGNFLSKDPGAYDLGELDQALFLYLDGHDPSAIQEQRHNSDIRPPTLNIFPSQPMHVEPPIKASLGLVSPSTSGSKRPSEPSMELANPKNDANVSGPDQPAKAVKREGNRKGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQRARAQGLIFTGGGLLGGGGGDQNAPVAVTNLSSDAAVFDMEYGRWLEEHHRLMCELRAAVQEHLPENDLRLFVDNCIAHFDGMMNLKSMVAKSDVFHLVSGMWKTPAERCFMWMGGFRPSEVIKIILNQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSLSDTIASDSLSAPPNMANYMGQMAIAMNKLSTLEGFVRQADNLRHQTIHRLQQVLTTRQAARCLLAMAEYFHRLRALSSLWMARPRQE* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1401 491 Pfam bZIP transcription factor 197 237 IPR004827 GO:0003700|GO:0006355
Vvi8g1401 491 MobiDBLite consensus disorder prediction 104 200 - -
Vvi8g1401 491 SUPERFAMILY Leucine zipper domain 197 239 IPR046347 GO:0003700|GO:0006355
Vvi8g1401 491 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 200 215 IPR004827 GO:0003700|GO:0006355
Vvi8g1401 491 ProSiteProfiles DOG1 domain profile. 273 487 IPR025422 GO:0006351|GO:0043565
Vvi8g1401 491 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 195 239 IPR004827 GO:0003700|GO:0006355
Vvi8g1401 491 SMART brlzneu 193 275 IPR004827 GO:0003700|GO:0006355
Vvi8g1401 491 MobiDBLite consensus disorder prediction 135 163 - -
Vvi8g1401 491 PANTHER TRANSCRIPTION FACTOR TGA9 104 490 - -
Vvi8g1401 491 Pfam Seed dormancy control 291 365 IPR025422 GO:0006351|GO:0043565
Vvi8g1401 491 Coils Coil 216 243 - -
Vvi8g1401 491 Gene3D - 196 245 - -
Vvi8g1401 491 MobiDBLite consensus disorder prediction 25 52 - -
Vvi8g1401 491 FunFam BZIP family transcription factor 196 245 - -
Vvi8g1401 491 CDD bZIP_HBP1b-like 197 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1401 Vvi-Chr8 19963759 19968190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1401 71 491 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 65.393 0.0 567
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi8g1401 DOG1 5.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1401 K14431 - vvi:100262335 933.71