Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1400 ATGGCACCAAGGAAAACCCCAAGAACAAGCCGAAACCCGGATCTGATTCGCGGCGTCGGCAAGTTCTCTAGATCGAAAATGTACCACAAGCGTGGTCTCTGGGCCATCAAGGCTAAAAACGGCGGTGTTTTCCCTTGCCACGAGAAGAAGCCGGTGGCTCCAGCTCCATTGGAGAAGCTGCCAAAGTTCTACCCGGCCGATGATGTCAAGAAGCCATTGATCAATAAGCACAAAGCCAAGCCGACCAAACTCAGGGCAAGTATTACACCTGGAACGGTGTTGATTATCTTGGCTGGGAGGTTTAAAGGGAAGAGAGTTGTTTTTCTGAAACAACTCTCATCCGGGTTGCTTCTGATTACCGGGCCATTCAAGATTAATGGTGTTCCTCTAAGGCGTGTAAATCAAGCTTATGTGATTGCAACTTCCACGAAGGTTGACATTTCCAAGGTCAATGTGGAGAAGTTTGATGACAAGTACTTTGCCAAGGAAGTACAAAAGAAGAAGAAGGGAGAGGGAGAGTTTTTTGAGGCAGAGAAGGAGGAAAAGAAGGATCTCCCGCAGGAGAAGAAAGATGACCAGAAGGCTGTTGATGCTTCATTGATTGCATCCATTGAGGGAGTTCCCGAGTTGAAGGTATACCTGGCTGCAAGATTTTCTCTCAAGTCAGGCATGAAACCTCATGAGCTTGTCTTCTAA 696 0.4727 MAPRKTPRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPCHEKKPVAPAPLEKLPKFYPADDVKKPLINKHKAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLITGPFKINGVPLRRVNQAYVIATSTKVDISKVNVEKFDDKYFAKEVQKKKKGEGEFFEAEKEEKKDLPQEKKDDQKAVDASLIASIEGVPELKVYLAARFSLKSGMKPHELVF* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1400 231 Gene3D - 86 170 IPR014722 -
Vvi8g1400 231 Pfam Ribosomal protein L6, N-terminal domain 4 58 IPR005568 GO:0003735|GO:0005840|GO:0006412
Vvi8g1400 231 CDD KOW_RPL6 80 231 IPR041997 -
Vvi8g1400 231 PANTHER 60S RIBOSOMAL PROTEIN L6 1 231 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vvi8g1400 231 ProSitePatterns Ribosomal protein L6e signature. 126 144 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vvi8g1400 231 Pfam Ribosomal protein L6e 125 231 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vvi8g1400 231 FunFam 60S ribosomal protein L6 86 170 - -
Vvi8g1400 231 SUPERFAMILY Translation proteins SH3-like domain 86 176 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1400 Vvi-Chr8 19956920 19960245 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1400 2 231 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 80.087 1.42e-117 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1400 K02934 - vvi:100257150 441.425