Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1386 ATGTTGGGACATTTCTTGCATCAATGTTATATACTTTATGCTAAGTTGTTTTTGGAGGGAGAGACAGTTGGCTGGCAATGTATACGCCTGTGCGTGTGTAAATCAAAGAGGTGGAAATGGGTTTTCACAAGGCTTAAGCTCAAACAATGCCCTGCACTTGCAGCCCCATGTAGAACATTGACTGAGGCAAGAGATGAGCAGAAAAAGCATGCTATGACTGTTGCCCTAGCAACAGCAGCTGCAGCTGAGGCTGCCGTTGCTGCTGCCCATGCTGCAGCTGAGGTTGTCAGGCTCACAGGCACTCCTCAATCTTATCATACATATGACAAAGGAAACCAAAACTTGGCTGCCATTAAAATTCAAACAGCTTTCCGGGGACATCTTGCTAGGAAAGCACTGCGGGCATTGAAGGGATTGGTAAGGCTTCAAGCTCTGATTCGAGGCCAAATTTTGAGACGCCAAGTAATCACCACACTCAAGTGTTTGCCCTCCACTGCAAATAATCAGGCACAAGTTAACAAAAGGGGAGTTCTGACTGCAAATGAAAGTTATAAAGACAGTGATAACAGAAAGTTTCTTAGGCCAAAGGAATTGGGAGGGAGAGAAATAAAGGACTATGTTATTGAGCAGCTTGAAGGCAGTAGTAAGAAAAGTTGGGATTGCAGCATGTTATTAAAAGAAGATATGGAAACTATTTGGTTAAGAAAGCAAGAGGCCGTCACCAAAAGAGAGCGGATGAAGAAATACTCATCTTCGCACAGGGAGAGGATCAATGCTCAAATGACAGAGGAAACTGAATCCTACAAGGAGAATGGAAAATGGAACAGCCAGTTTGAGCAATGGATGGATGCCAGGGAATATGAAAGAGAAGAACTGGAGAATTCAAAATCAACAATCCATTTGAATATGTTAAACAGCGACAAAAATGGAACAACAAATGTTAAATTGAGAAATGCCTGTAAACAGAATTCCATAGAAGGATCAAATTTGCCATTTTCACACTCGAGGAGATCATTTTGTCACAGAAAACATAATTCAGAAGCAGATAACCGTTCCTTCCCAAGCTCTCCAGTTTTTCCAACTTATATGGCTACAACAGAATCTGCCAAGGCGAAGGCAAGATCAATGAGCATGCCAAAGCAGAGGGTTGGGTTTCTAGACAGTTGCTTTGATCACAGTTCAGCCTACAAGAATAGGCTATCATTTTGGTCTTCATTTAATGGTGAATCAATAAGCAACATTGGAAAGAATGGCACTCCGCAGAATTCTAAATGGTTTGTCATTATGGAGAAAACTTTTCTCTGCATATCATCTAAGAAGAAACCTTTTCATTCCTATCCAGCACGAACAGTTCTATAA 1359 0.4157 MLGHFLHQCYILYAKLFLEGETVGWQCIRLCVCKSKRWKWVFTRLKLKQCPALAAPCRTLTEARDEQKKHAMTVALATAAAAEAAVAAAHAAAEVVRLTGTPQSYHTYDKGNQNLAAIKIQTAFRGHLARKALRALKGLVRLQALIRGQILRRQVITTLKCLPSTANNQAQVNKRGVLTANESYKDSDNRKFLRPKELGGREIKDYVIEQLEGSSKKSWDCSMLLKEDMETIWLRKQEAVTKRERMKKYSSSHRERINAQMTEETESYKENGKWNSQFEQWMDAREYEREELENSKSTIHLNMLNSDKNGTTNVKLRNACKQNSIEGSNLPFSHSRRSFCHRKHNSEADNRSFPSSPVFPTYMATTESAKAKARSMSMPKQRVGFLDSCFDHSSAYKNRLSFWSSFNGESISNIGKNGTPQNSKWFVIMEKTFLCISSKKKPFHSYPARTVL* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1386 452 ProSiteProfiles IQ motif profile. 113 141 IPR000048 GO:0005515
Vvi8g1386 452 ProSiteProfiles IQ motif profile. 137 164 IPR000048 GO:0005515
Vvi8g1386 452 Gene3D - 111 162 - -
Vvi8g1386 452 SMART iq_5 112 134 IPR000048 GO:0005515
Vvi8g1386 452 Pfam Protein of unknown function (DUF4005) 346 417 IPR025064 -
Vvi8g1386 452 Pfam IQ calmodulin-binding motif 116 134 IPR000048 GO:0005515
Vvi8g1386 452 PANTHER IQ-DOMAIN 5-RELATED 36 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1386 Vvi-Chr8 19849692 19853893 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1386 24 406 IQD Protein Family AT5G03960 43.035 5.22e-66 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1386 - - vvi:100265924 737.643