Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1384 ATGGGGAAAAAGAGAAGCTGGTTCAGTTTGGTGAAGAGAATCTTCATTTCTGAGGCAAAAGAAAAAGAAGAGAAGAAACCAAAGAGCTGGAGATGCCTTTTCACAAGGTTTAAGCTCAAGCAATGCCCTACACTTGCAGCACCACGTAGAACATTGACTGAAGCAAGAGCCGAGCAGAGAAAACATGCTTTAACTGTTGCCTTAGCAACAGCAGCTGCAGCTGAGGCTGCAGTTGCTGCTGCCCGTGCTGCAGCTGAGGTTGTCCGGCTCACATGCTCTCCTCCATCTTATTACCATACCTGTGATAAGAGAAACCAAAACTTGGCTGCCATTAAAATTCAAACTGCTTTCCGGGGATATCTTGCAAGGAAAGCACTGCAGGCATTGAAAGGATTGGTAAGGCTTCAAGCTCTGGTTCGAGGCCAAATTGTGAGACGCCAAGCAATCACGAAACTCAAGTGTTTACCCTCCACTGCAAATACACGGGCACAGGTCAATATAGGGGGAGTTCTAACTACAGAAGAAACTTATAAAGATGGTAATAACAGAAAGTTTCTTAGGCCAAAGAAAGAGTGTGGAGGGAGAGAAATAAAGGCTTATGTTATTGAGCAGCTTGAAGGCAGCGGTCAGAGAAGTTGGGATTACAACATTTTATCACAAGAAGATGTGGAAACCATATGGTTGAGAAAGCAAGAGGCTCTCATCAGAAGAGAGCGGATGAAGAAATACTCATCCTCCCATAGGGAGAGGATAAATGCTCAAATGCCAGAGGAAACTGAACCCTACAAGGAGAATGGAAGACAGAGCTGCCAGTTAGTGCGGTGGATGGACAGTATGGAACACAAAAGAAAAGAAGCAGAGAATTCAAAGGCAGCAGCTGATTCAAATCTGTTAAATGGCCACATAAATGGAACAACAAATATTGAACTGAGAAATGGGTGGAAACAGAATTCCACAGAAGGATCAGATATGCCATTTTCACTCCCGAGGAGATCATTTTGTCACAGAAAGCATAATTCAGTTATCGATGACAGTTCCTTTCCAAGTTCTCCAGTTTTTCCAACTTATATGGCAGCAACAGAATCTGCCAAGGCGAAGGCTAGAGCACTGAGCACACCTAAGCAGAGGCTTGGGTTTCTAGACAGTTGCTTTGATCAGAGTTCACCATACACAAATAGGCCATCATTTTGGTCTTCACTTAATGGTGAATCAATTAGCAGCAGTGGAAGGAGTGGCTATTCTTGGCAGAACACTGTAAGCATGAAAAGCCTTAACTGA 1278 0.4382 MGKKRSWFSLVKRIFISEAKEKEEKKPKSWRCLFTRFKLKQCPTLAAPRRTLTEARAEQRKHALTVALATAAAAEAAVAAARAAAEVVRLTCSPPSYYHTCDKRNQNLAAIKIQTAFRGYLARKALQALKGLVRLQALVRGQIVRRQAITKLKCLPSTANTRAQVNIGGVLTTEETYKDGNNRKFLRPKKECGGREIKAYVIEQLEGSGQRSWDYNILSQEDVETIWLRKQEALIRRERMKKYSSSHRERINAQMPEETEPYKENGRQSCQLVRWMDSMEHKRKEAENSKAAADSNLLNGHINGTTNIELRNGWKQNSTEGSDMPFSLPRRSFCHRKHNSVIDDSSFPSSPVFPTYMAATESAKAKARALSTPKQRLGFLDSCFDQSSPYTNRPSFWSSLNGESISSSGRSGYSWQNTVSMKSLN* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1384 425 Pfam Protein of unknown function (DUF4005) 339 414 IPR025064 -
Vvi8g1384 425 Coils Coil 276 296 - -
Vvi8g1384 425 PANTHER IQ-DOMAIN 5-RELATED 1 398 - -
Vvi8g1384 425 ProSiteProfiles IQ motif profile. 106 134 IPR000048 GO:0005515
Vvi8g1384 425 Pfam IQ calmodulin-binding motif 109 126 IPR000048 GO:0005515
Vvi8g1384 425 Gene3D - 104 155 - -
Vvi8g1384 425 SMART iq_5 105 127 IPR000048 GO:0005515
Vvi8g1384 425 SMART iq_5 128 149 IPR000048 GO:0005515
Vvi8g1384 425 ProSiteProfiles IQ motif profile. 130 157 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1384 Vvi-Chr8 19843662 19845717 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1384 1 404 IQD Protein Family AT5G03960 42.892 1.69e-78 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1384 - - vvi:100253695 770