Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi8g1381 | ATGGATGTAGACGAGGAAAACCCTGTTTCAGTTTCACTTGCAGAACCTTCTGCGGCAGTCACTGATGATCAAACTCCAGTTTCAACCATTGATCCTACCCCACTACCAGCAATGCAACCTATTATACCTTCATTAGTCCCCCCTCCAATTGTGCCTCCTATTGCTCCCATACCCTCAGTTTCTGCCCCAATCCTCCGGCCATTGGCTCCTCTCCCTGTGCGTCCACCTGTCCTTAGGCCACCCCTTCCACAAAATGGTGAGATGAGAGCCAGTGATTCAGATTCTGATCGTGATGACTCAGGCCGTGCCCAGGCAGCTTCAGGTTCAGCTGTAGAATATGAGATTTCAGAAGAGAGCAGACAGTTTAGAGAGCGGCAAGAAAAAGCAAAGCAGGAATTCTTGATGAAGCGTCGTGCTTCTGCTCTAGCAGTGCCTACTAATGACATGGCTGTACGGACTCGCCTTCGCCGGCTTGGTGAACCCATAACCCTTTTTGGAGAAAGAGAGATGGAAAGACGAGATCGGCTGAGGATGATTATGGCAAAACTGGATGCCGAGGGGCAATTGGAGAAGCTGATGAAAGCTCATGAGGAGGAGGAGGCTGCAGCTCCTGTTGCAATGGAAGAAGTTGAAGAGGAAACTCTTCAGTACCCATTCTATACTGAAGGTTCAAAATCTCTTTTAGAGGCTCGAGTTGAGATTGCTAAGTATTCGATTAAGAGAGCAGCTTCACGTCTTTACCGTGCAAGGAGGAAAAGGGATGATCCAGATGAAGATTTGGATGCAGAGATGGATTGGGTTTTGAAAGAGGCTGGGAGTTTGGTCTTAGATTGCAGTGAAATTGGAGATGATCGACCACTTTCTGGATGTTCTTTCTCACATGATGGAAAACTGCTTGCCGCCTGTGCTCTAAGCGGAGTTGCTAAGATATGGAGCATGCCTCAAGTAAATAAGGTCTCTGCCCTAAAGGGACATACAGAACGTGCAACTGATGTTGCATTTTCTCCTGCACTCAACCATTTAGCAACTGCCTCTGCTGACCGAACTGCAAGGTTGTGGAATTCTGAAGGGTCTCTTCTGAAGACATTTGAGGGCCATCTGGACCGTCTTGCCCGCATCGCCTTTCATCCATCAGGGAAATACCTGGGCACAGCTAGCTTTGACAAGACTTGGAGATTATGGGATGTAGAGACTGGTGAGGAGTTGCTTCTTCAAGAAGGTCATAGTAGGAGTGTATATGGGATATCTTTCCACCGGGATGGATCTTTAGCAGCATCATGCGGACTGGATGCACTTGGTCGTGTATGGGACCTTCGGTCTGGGAGAAGCATTCTTGCATTGGAAGGCCATGTTAAGCCTGTTCTGGGGATATGTTTTTCCCCTAATGGTTATCATTTAGCCACTGGTGCTGAAGACAATACTTGTCGAATTTGGGATTTAAGAAAGAAGAAATCCTTGTATGTAATTCCAGCTCACTCAAACCTTGTTTCACAAGTTAAATTTGAGCCTCAAGAAGGATACTTTTTGGTAACTGCTTCGTATGATATGACAGCAAAGGTATGGTCAGCCCGAGATTTTAAGCCTGTTAAAACATTATCTGGACATGAAGCAAAAGTTACATCTTTGGATATAACGGAAGATGGACATTGTATTGCAACTGTGTCACATGATCGAACAATTAAGTTGTGGTCATCTGCAGAAATTGAAAAGGAGAAGGCTATGGATATAGACTAA | 1734 | 0.4585 | MDVDEENPVSVSLAEPSAAVTDDQTPVSTIDPTPLPAMQPIIPSLVPPPIVPPIAPIPSVSAPILRPLAPLPVRPPVLRPPLPQNGEMRASDSDSDRDDSGRAQAASGSAVEYEISEESRQFRERQEKAKQEFLMKRRASALAVPTNDMAVRTRLRRLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEEEEAAAPVAMEEVEEETLQYPFYTEGSKSLLEARVEIAKYSIKRAASRLYRARRKRDDPDEDLDAEMDWVLKEAGSLVLDCSEIGDDRPLSGCSFSHDGKLLAACALSGVAKIWSMPQVNKVSALKGHTERATDVAFSPALNHLATASADRTARLWNSEGSLLKTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDVETGEELLLQEGHSRSVYGISFHRDGSLAASCGLDALGRVWDLRSGRSILALEGHVKPVLGICFSPNGYHLATGAEDNTCRIWDLRKKKSLYVIPAHSNLVSQVKFEPQEGYFLVTASYDMTAKVWSARDFKPVKTLSGHEAKVTSLDITEDGHCIATVSHDRTIKLWSSAEIEKEKAMDID* | 578 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi8g1381 | 577 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 322 | 354 | IPR001680 | GO:0005515 | |
Vvi8g1381 | 577 | Pfam | WD domain, G-beta repeat | 357 | 395 | IPR001680 | GO:0005515 | |
Vvi8g1381 | 577 | Pfam | WD domain, G-beta repeat | 406 | 437 | IPR001680 | GO:0005515 | |
Vvi8g1381 | 577 | Pfam | WD domain, G-beta repeat | 445 | 479 | IPR001680 | GO:0005515 | |
Vvi8g1381 | 577 | Pfam | WD domain, G-beta repeat | 527 | 564 | IPR001680 | GO:0005515 | |
Vvi8g1381 | 577 | Pfam | WD domain, G-beta repeat | 485 | 522 | IPR001680 | GO:0005515 | |
Vvi8g1381 | 577 | Pfam | WD domain, G-beta repeat | 319 | 354 | IPR001680 | GO:0005515 | |
Vvi8g1381 | 577 | Gene3D | - | 118 | 191 | IPR036285 | - | |
Vvi8g1381 | 577 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 405 | 446 | IPR001680 | GO:0005515 | |
Vvi8g1381 | 577 | CDD | WD40 | 286 | 564 | - | - | |
Vvi8g1381 | 577 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 363 | 400 | - | - | |
Vvi8g1381 | 577 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 447 | 481 | - | - | |
Vvi8g1381 | 577 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 322 | 354 | - | - | |
Vvi8g1381 | 577 | Gene3D | - | 449 | 574 | IPR015943 | GO:0005515 | |
Vvi8g1381 | 577 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 532 | 564 | - | - | |
Vvi8g1381 | 577 | Coils | Coil | 182 | 202 | - | - | |
Vvi8g1381 | 577 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 405 | 442 | - | - | |
Vvi8g1381 | 577 | MobiDBLite | consensus disorder prediction | 75 | 127 | - | - | |
Vvi8g1381 | 577 | FunFam | U4/U6 small nuclear ribonucleoprotein PRP4-like protein | 262 | 446 | - | - | |
Vvi8g1381 | 577 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 382 | 396 | IPR019775 | - | |
Vvi8g1381 | 577 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 447 | 488 | IPR001680 | GO:0005515 | |
Vvi8g1381 | 577 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 489 | 531 | IPR001680 | GO:0005515 | |
Vvi8g1381 | 577 | SMART | pr04_2 | 146 | 199 | IPR014906 | - | |
Vvi8g1381 | 577 | PRINTS | G protein beta WD-40 repeat signature | 466 | 480 | IPR020472 | - | |
Vvi8g1381 | 577 | PRINTS | G protein beta WD-40 repeat signature | 341 | 355 | IPR020472 | - | |
Vvi8g1381 | 577 | PRINTS | G protein beta WD-40 repeat signature | 382 | 396 | IPR020472 | - | |
Vvi8g1381 | 577 | SMART | WD40_4 | 271 | 312 | IPR001680 | GO:0005515 | |
Vvi8g1381 | 577 | SMART | WD40_4 | 315 | 354 | IPR001680 | GO:0005515 | |
Vvi8g1381 | 577 | SMART | WD40_4 | 440 | 479 | IPR001680 | GO:0005515 | |
Vvi8g1381 | 577 | SMART | WD40_4 | 525 | 564 | IPR001680 | GO:0005515 | |
Vvi8g1381 | 577 | SMART | WD40_4 | 398 | 437 | IPR001680 | GO:0005515 | |
Vvi8g1381 | 577 | SMART | WD40_4 | 482 | 522 | IPR001680 | GO:0005515 | |
Vvi8g1381 | 577 | SMART | WD40_4 | 356 | 395 | IPR001680 | GO:0005515 | |
Vvi8g1381 | 577 | Pfam | pre-mRNA processing factor 4 (PRP4) like | 151 | 177 | IPR014906 | - | |
Vvi8g1381 | 577 | Gene3D | - | 267 | 448 | IPR015943 | GO:0005515 | |
Vvi8g1381 | 577 | SUPERFAMILY | WD40 repeat-like | 281 | 563 | IPR036322 | GO:0005515 | |
Vvi8g1381 | 577 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 489 | 522 | - | - | |
Vvi8g1381 | 577 | SUPERFAMILY | PRP4-like | 130 | 184 | IPR036285 | - | |
Vvi8g1381 | 577 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 466 | 480 | IPR019775 | - | |
Vvi8g1381 | 577 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 532 | 564 | IPR001680 | GO:0005515 | |
Vvi8g1381 | 577 | MobiDBLite | consensus disorder prediction | 17 | 32 | - | - | |
Vvi8g1381 | 577 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 363 | 404 | IPR001680 | GO:0005515 | |
Vvi8g1381 | 577 | PANTHER | WD40 REPEAT PROTEIN | 91 | 564 | - | - | |
Vvi8g1381 | 577 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Vvi8g1381 | 577 | FunFam | U4/U6 small nuclear ribonucleoprotein Prp4 | 490 | 566 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi8g1381 | Vvi-Chr8 | 19822159 | 19825380 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi8g1381 | 367 | 574 | U-box Gene Family | AT2G33340 | 23.276 | 1.88e-12 | 67.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi8g1381 | K12662 | - | vvi:100243602 | 1014.22 |