Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1381 ATGGATGTAGACGAGGAAAACCCTGTTTCAGTTTCACTTGCAGAACCTTCTGCGGCAGTCACTGATGATCAAACTCCAGTTTCAACCATTGATCCTACCCCACTACCAGCAATGCAACCTATTATACCTTCATTAGTCCCCCCTCCAATTGTGCCTCCTATTGCTCCCATACCCTCAGTTTCTGCCCCAATCCTCCGGCCATTGGCTCCTCTCCCTGTGCGTCCACCTGTCCTTAGGCCACCCCTTCCACAAAATGGTGAGATGAGAGCCAGTGATTCAGATTCTGATCGTGATGACTCAGGCCGTGCCCAGGCAGCTTCAGGTTCAGCTGTAGAATATGAGATTTCAGAAGAGAGCAGACAGTTTAGAGAGCGGCAAGAAAAAGCAAAGCAGGAATTCTTGATGAAGCGTCGTGCTTCTGCTCTAGCAGTGCCTACTAATGACATGGCTGTACGGACTCGCCTTCGCCGGCTTGGTGAACCCATAACCCTTTTTGGAGAAAGAGAGATGGAAAGACGAGATCGGCTGAGGATGATTATGGCAAAACTGGATGCCGAGGGGCAATTGGAGAAGCTGATGAAAGCTCATGAGGAGGAGGAGGCTGCAGCTCCTGTTGCAATGGAAGAAGTTGAAGAGGAAACTCTTCAGTACCCATTCTATACTGAAGGTTCAAAATCTCTTTTAGAGGCTCGAGTTGAGATTGCTAAGTATTCGATTAAGAGAGCAGCTTCACGTCTTTACCGTGCAAGGAGGAAAAGGGATGATCCAGATGAAGATTTGGATGCAGAGATGGATTGGGTTTTGAAAGAGGCTGGGAGTTTGGTCTTAGATTGCAGTGAAATTGGAGATGATCGACCACTTTCTGGATGTTCTTTCTCACATGATGGAAAACTGCTTGCCGCCTGTGCTCTAAGCGGAGTTGCTAAGATATGGAGCATGCCTCAAGTAAATAAGGTCTCTGCCCTAAAGGGACATACAGAACGTGCAACTGATGTTGCATTTTCTCCTGCACTCAACCATTTAGCAACTGCCTCTGCTGACCGAACTGCAAGGTTGTGGAATTCTGAAGGGTCTCTTCTGAAGACATTTGAGGGCCATCTGGACCGTCTTGCCCGCATCGCCTTTCATCCATCAGGGAAATACCTGGGCACAGCTAGCTTTGACAAGACTTGGAGATTATGGGATGTAGAGACTGGTGAGGAGTTGCTTCTTCAAGAAGGTCATAGTAGGAGTGTATATGGGATATCTTTCCACCGGGATGGATCTTTAGCAGCATCATGCGGACTGGATGCACTTGGTCGTGTATGGGACCTTCGGTCTGGGAGAAGCATTCTTGCATTGGAAGGCCATGTTAAGCCTGTTCTGGGGATATGTTTTTCCCCTAATGGTTATCATTTAGCCACTGGTGCTGAAGACAATACTTGTCGAATTTGGGATTTAAGAAAGAAGAAATCCTTGTATGTAATTCCAGCTCACTCAAACCTTGTTTCACAAGTTAAATTTGAGCCTCAAGAAGGATACTTTTTGGTAACTGCTTCGTATGATATGACAGCAAAGGTATGGTCAGCCCGAGATTTTAAGCCTGTTAAAACATTATCTGGACATGAAGCAAAAGTTACATCTTTGGATATAACGGAAGATGGACATTGTATTGCAACTGTGTCACATGATCGAACAATTAAGTTGTGGTCATCTGCAGAAATTGAAAAGGAGAAGGCTATGGATATAGACTAA 1734 0.4585 MDVDEENPVSVSLAEPSAAVTDDQTPVSTIDPTPLPAMQPIIPSLVPPPIVPPIAPIPSVSAPILRPLAPLPVRPPVLRPPLPQNGEMRASDSDSDRDDSGRAQAASGSAVEYEISEESRQFRERQEKAKQEFLMKRRASALAVPTNDMAVRTRLRRLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEEEEAAAPVAMEEVEEETLQYPFYTEGSKSLLEARVEIAKYSIKRAASRLYRARRKRDDPDEDLDAEMDWVLKEAGSLVLDCSEIGDDRPLSGCSFSHDGKLLAACALSGVAKIWSMPQVNKVSALKGHTERATDVAFSPALNHLATASADRTARLWNSEGSLLKTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDVETGEELLLQEGHSRSVYGISFHRDGSLAASCGLDALGRVWDLRSGRSILALEGHVKPVLGICFSPNGYHLATGAEDNTCRIWDLRKKKSLYVIPAHSNLVSQVKFEPQEGYFLVTASYDMTAKVWSARDFKPVKTLSGHEAKVTSLDITEDGHCIATVSHDRTIKLWSSAEIEKEKAMDID* 578
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1381 577 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 354 IPR001680 GO:0005515
Vvi8g1381 577 Pfam WD domain, G-beta repeat 357 395 IPR001680 GO:0005515
Vvi8g1381 577 Pfam WD domain, G-beta repeat 406 437 IPR001680 GO:0005515
Vvi8g1381 577 Pfam WD domain, G-beta repeat 445 479 IPR001680 GO:0005515
Vvi8g1381 577 Pfam WD domain, G-beta repeat 527 564 IPR001680 GO:0005515
Vvi8g1381 577 Pfam WD domain, G-beta repeat 485 522 IPR001680 GO:0005515
Vvi8g1381 577 Pfam WD domain, G-beta repeat 319 354 IPR001680 GO:0005515
Vvi8g1381 577 Gene3D - 118 191 IPR036285 -
Vvi8g1381 577 ProSiteProfiles Trp-Asp (WD) repeats profile. 405 446 IPR001680 GO:0005515
Vvi8g1381 577 CDD WD40 286 564 - -
Vvi8g1381 577 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 363 400 - -
Vvi8g1381 577 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 447 481 - -
Vvi8g1381 577 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 322 354 - -
Vvi8g1381 577 Gene3D - 449 574 IPR015943 GO:0005515
Vvi8g1381 577 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 532 564 - -
Vvi8g1381 577 Coils Coil 182 202 - -
Vvi8g1381 577 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 405 442 - -
Vvi8g1381 577 MobiDBLite consensus disorder prediction 75 127 - -
Vvi8g1381 577 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 262 446 - -
Vvi8g1381 577 ProSitePatterns Trp-Asp (WD) repeats signature. 382 396 IPR019775 -
Vvi8g1381 577 ProSiteProfiles Trp-Asp (WD) repeats profile. 447 488 IPR001680 GO:0005515
Vvi8g1381 577 ProSiteProfiles Trp-Asp (WD) repeats profile. 489 531 IPR001680 GO:0005515
Vvi8g1381 577 SMART pr04_2 146 199 IPR014906 -
Vvi8g1381 577 PRINTS G protein beta WD-40 repeat signature 466 480 IPR020472 -
Vvi8g1381 577 PRINTS G protein beta WD-40 repeat signature 341 355 IPR020472 -
Vvi8g1381 577 PRINTS G protein beta WD-40 repeat signature 382 396 IPR020472 -
Vvi8g1381 577 SMART WD40_4 271 312 IPR001680 GO:0005515
Vvi8g1381 577 SMART WD40_4 315 354 IPR001680 GO:0005515
Vvi8g1381 577 SMART WD40_4 440 479 IPR001680 GO:0005515
Vvi8g1381 577 SMART WD40_4 525 564 IPR001680 GO:0005515
Vvi8g1381 577 SMART WD40_4 398 437 IPR001680 GO:0005515
Vvi8g1381 577 SMART WD40_4 482 522 IPR001680 GO:0005515
Vvi8g1381 577 SMART WD40_4 356 395 IPR001680 GO:0005515
Vvi8g1381 577 Pfam pre-mRNA processing factor 4 (PRP4) like 151 177 IPR014906 -
Vvi8g1381 577 Gene3D - 267 448 IPR015943 GO:0005515
Vvi8g1381 577 SUPERFAMILY WD40 repeat-like 281 563 IPR036322 GO:0005515
Vvi8g1381 577 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 489 522 - -
Vvi8g1381 577 SUPERFAMILY PRP4-like 130 184 IPR036285 -
Vvi8g1381 577 ProSitePatterns Trp-Asp (WD) repeats signature. 466 480 IPR019775 -
Vvi8g1381 577 ProSiteProfiles Trp-Asp (WD) repeats profile. 532 564 IPR001680 GO:0005515
Vvi8g1381 577 MobiDBLite consensus disorder prediction 17 32 - -
Vvi8g1381 577 ProSiteProfiles Trp-Asp (WD) repeats profile. 363 404 IPR001680 GO:0005515
Vvi8g1381 577 PANTHER WD40 REPEAT PROTEIN 91 564 - -
Vvi8g1381 577 MobiDBLite consensus disorder prediction 1 35 - -
Vvi8g1381 577 FunFam U4/U6 small nuclear ribonucleoprotein Prp4 490 566 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi8g1381 Vvi-Chr8 19822159 19825380 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1381 367 574 U-box Gene Family AT2G33340 23.276 1.88e-12 67.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1381 K12662 - vvi:100243602 1014.22