Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1378 ATGGCGCCAAAAAAGAGCTTACAGCACTCATCAATTCCAATCGGTAAATCAGAAATCAAAACCCTAGGAGACTCTAGGTTTTCTAATCGAAAGATTTTGATGGCAATGGATTTCAAATTTTCAGGAAATTGCGAGATCTCAATACAAGGAAAGGCTACCTGCCAATCGGATCCAAACTGCCTTCTCATTTCTGCATCTAAAAATACAAAAATAAAAGTTTCAGGTCTTACCTTGTTTGTTTGTTTTACTTCAGTGAAAGCAGAGAGAACATCTTTTGGGGATGAGTACTTCTTTTTGCTTATTAACCCTAAGGATGTCTGTAGCCAAAGCAAATCTCTTCTTCAGGAGGTATTGAACATATACAAGGAGGAGTTGCCTGCAATGAATTATGCTGCAAATACTGGGAAAGAGTCAATGTTCCTTGAAAGATGTGTATCAAATGGGAAATATTGCTCATTGCTTTTGCTATCAAATTTCATGGAAGGACCTGGCAAGGTTATAGCTGCAGTTACTTACCAAATCATTCCTGCTGACACACAGTATGCTGAGATTCCTCTTACTGCTGTTAGCTCAAACTTTCAAAGCAAGGGGATTGGTCGCCTCTTGTACATAGAATTGAGAAAAAGGCTTCAGAATGTTGGTATTCGCACGATATTCTGCTGGGGAGACAAGGAATCTGAAGGATTTTGGCTCAAGCAGGGTTTTGTATCGATAGCAGAAGTGGATACCAAAGGGAGAGCTCGCAGACTACCCATTAGGGCTGACATTCGCAGGGCACTGTGCTTTCCTGGTGGATCAACCCTCATGGTTTCTCATCTCAGCAAAGACATTTCAGCTAACTTTTCAGATGCTGTGAAGAAGTCTTTTTCATTAAAGCCTCATGAGAAGTCCTCATCACTTGATGTTCAAATTCAAGGGCTGGGAGATATAGGGGAGAGTCTTGATACTCTAAAAGCACCAGTTCAAACTAGCCTTAAAACATTTCTACCTCATGTTTTGGTGAAGGATGGATTCCAGAAAGATGATGACATGTTGGATGGTTCTTTTCATAATCATGAGTCAATAAATGTCTGTAGAGACCTGGTTCCTTTTGAGGAAGTAGATTGCAACAACATGACCAATGATGTAAGATTAACTGGTGTTGGAACTGATGTTGAAGCAAACTGTTCCTGTTCTGCACATGGTGCCAAAAAGAGGGTTTGGGAAGCCTCATTGTCTTCACTGAAGTCCAAAAAAGTAAAGGGAAGTCATCAAATTGGCTGCCAGTTAGATTCCAACTGGGATATTGTTTCGGGAAATGGTAAAATAGATAATGTGTGTTTTGTTGGATGCTCCTTGGGCACTACTAGAAATGAATCTTTGTCTGAAGTTCTCCCTAGGGATATTCTGTCCAGTAGCTATGTAGAGAAGAATGTTGAAGATTGTAGGCCACTGTCAAAAGATCAGCTCAGCTTTGAACTTCAAGAAAAGGGAGAAGGATTTAGAATCATGTTGATGAATATTGCTGATGATACTAAGAAAGCACATCTTACAAAGATAATCAAGGATCTTGGTGGTTCTGTAACCTCTGATGGAAGTGCATGCACACATGTTGTCACAGGAAAAGTGAGAAAGACACTGAATTTTTGCACTGCTTTATGTTCCGGGTTAGTTTTAATCAGAACTGAAAATTATACCACTTGA 1683 0.3987 MAPKKSLQHSSIPIGKSEIKTLGDSRFSNRKILMAMDFKFSGNCEISIQGKATCQSDPNCLLISASKNTKIKVSGLTLFVCFTSVKAERTSFGDEYFFLLINPKDVCSQSKSLLQEVLNIYKEELPAMNYAANTGKESMFLERCVSNGKYCSLLLLSNFMEGPGKVIAAVTYQIIPADTQYAEIPLTAVSSNFQSKGIGRLLYIELRKRLQNVGIRTIFCWGDKESEGFWLKQGFVSIAEVDTKGRARRLPIRADIRRALCFPGGSTLMVSHLSKDISANFSDAVKKSFSLKPHEKSSSLDVQIQGLGDIGESLDTLKAPVQTSLKTFLPHVLVKDGFQKDDDMLDGSFHNHESINVCRDLVPFEEVDCNNMTNDVRLTGVGTDVEANCSCSAHGAKKRVWEASLSSLKSKKVKGSHQIGCQLDSNWDIVSGNGKIDNVCFVGCSLGTTRNESLSEVLPRDILSSSYVEKNVEDCRPLSKDQLSFELQEKGEGFRIMLMNIADDTKKAHLTKIIKDLGGSVTSDGSACTHVVTGKVRKTLNFCTALCSGLVLIRTENYTT* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1378 560 CDD NAT_SF 164 221 - -
Vvi8g1378 560 ProSiteProfiles BRCT domain profile. 492 560 IPR001357 -
Vvi8g1378 560 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 111 276 - -
Vvi8g1378 560 Pfam Acetyltransferase (GNAT) family 149 235 IPR000182 GO:0016747
Vvi8g1378 560 SUPERFAMILY BRCT domain 493 553 IPR036420 -
Vvi8g1378 560 CDD BRCT_MDC1_rpt1 494 549 - -
Vvi8g1378 560 Gene3D BRCT domain 482 556 IPR036420 -
Vvi8g1378 560 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 114 242 IPR016181 -
Vvi8g1378 560 Gene3D - 97 249 - -
Vvi8g1378 560 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 104 255 IPR000182 GO:0016747
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vvi8g1378 Acetyltransf_1 2.5e-07 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1378 - - vvi:100245305 996.112