Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1361 ATGACCCTTGAAGACTCCTTAAGATCTCTGTCTCTGGACTATCTAAACCTGCTCATCAATGGCCAAGCCTTCAGCGATGTAACTTTCAATGTGGAGGGTCGATTGGTACATGCCCACCGGTGCATCTTGGCAGCGAGAAGCCTCTTTTTCAGGAAATTCTTTTGCGGACCAGACCCACCGGCGGGGCTGGACCCGGGGGGTTCCAGGATGGGCTCGGCGGCGGCGGCGTTGGCGACGTCGCCCAGGGGCGGGAATTCGCACGTGATACCTGTGAATTCAGTGGGGTATGAAGTGTTTTTGTTGGTGTTGCAGTTCTTGTACAGTGGACAAGTCTCTATTGTGCCCCAGAAGCATGAGCCCAGGCCTAATTGTGGCGAGAGAGGGTGTTGGCACACGCATTGCACTTCAGCCGTTGATCTTGCTCTCGATACTCTGGCTGCTGCTAGATCTTTCGGCGTCGAACAGCTTGCATTGCTCACTCAGAAGCAATTGGCAAGCATGGTGGAGAAGGCCTCGATTGAAGATGTAATGAAAGTACTAATAGCTTCAAGAAAGCAAGACATGCACCAGCTTTGGACTACCTGTTCCCACCTTGTTGCCAAATCTGGCCTACCACCAGAAGTCCTAGCCAAGCACCTTCCCATCGATGTGGTTGCCAAGATCGAAGAGCTTCGACTTAAGTCCTCTCTTGCTCGCCGTTCCCTAATGCCCCATCACCACCACCACCAAGATATTGGTGCTGCGGCTGATCTCGAGGACCAGAAAATTCGTCGAATGAGAAGAGCTCTCGACTCATCTGATGTGGAGCTGGTCAAGCTTATGGTCATGGGTGAGGGCCTCAATCTCGATGAAGCATTAGCTCTACATTATGCTGTTGAGAATTGTAGCCGGGAAGTGGTTAAAGCTTTGCTCGAGCTTGGTGCAGCCGATGTGAACTACCCCGCTGGACCAGCTGGGAAAACTCCACTCCACATTGCGGCCGAGATGGTATCCCCCGATATGGTGGCAGTTCTTCTGGATCACCACGCCGACCCGAATGTCCGAACTGTGGATGGTGTCACACCTCTCGACGTACTTCGAACCCTAACTTCTGATTTCCTCTTCAAAGGGGCTGTTCCGGGGCTAACACACATTGAACCAAATAAGCTAAGGCTCTGCCTTGAGCTAGTTCAATCCGCAGCTCTGGTTCTTTCTCGGGAAGAAGGCAGTGCAAACGCTCCTTCTTCTACTACAATTTACCCACCAATGAGCGATGATCATCACAGTAGCAGCAGCAGCAGCAACATGGCTAGCCTAAACCTGGATTCAAGGTTGGTTTATCTCAATCTCGGTGCGACGGGTTCGGGTCAAATGGGGTCTAGAATGGATAGAGAAGATGATGTTAGCCACAATAACCAGAGGGAAGCCATGAATCGACATGGATCGCAAGGTGGCTGTGACACATCAATGTACCACCACTCCCATGAGTACTAG 1473 0.5166 MTLEDSLRSLSLDYLNLLINGQAFSDVTFNVEGRLVHAHRCILAARSLFFRKFFCGPDPPAGLDPGGSRMGSAAAALATSPRGGNSHVIPVNSVGYEVFLLVLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARSFGVEQLALLTQKQLASMVEKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKSSLARRSLMPHHHHHQDIGAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDVLRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGSANAPSSTTIYPPMSDDHHSSSSSSNMASLNLDSRLVYLNLGATGSGQMGSRMDREDDVSHNNQREAMNRHGSQGGCDTSMYHHSHEY* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1361 490 FunFam regulatory protein NPR5 isoform X2 249 366 - -
Vvi8g1361 490 Gene3D Potassium Channel Kv1.1; Chain A 4 201 IPR011333 -
Vvi8g1361 490 Gene3D - 249 366 IPR036770 -
Vvi8g1361 490 CDD BTB_POZ_NPR_plant 8 168 - -
Vvi8g1361 490 SMART BTB_4 25 168 IPR000210 GO:0005515
Vvi8g1361 490 Pfam Ankyrin repeats (3 copies) 266 348 IPR002110 GO:0005515
Vvi8g1361 490 Pfam BTB/POZ domain 16 116 IPR000210 GO:0005515
Vvi8g1361 490 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 489 IPR044284 GO:0099402
Vvi8g1361 490 SUPERFAMILY POZ domain 9 197 IPR011333 -
Vvi8g1361 490 ProSiteProfiles Ankyrin repeat profile. 318 350 IPR002110 GO:0005515
Vvi8g1361 490 MobiDBLite consensus disorder prediction 469 490 - -
Vvi8g1361 490 SMART ANK_2a 318 347 IPR002110 GO:0005515
Vvi8g1361 490 SMART ANK_2a 283 313 IPR002110 GO:0005515
Vvi8g1361 490 MobiDBLite consensus disorder prediction 402 429 - -
Vvi8g1361 490 ProSiteProfiles Ankyrin repeat region circular profile. 318 348 - -
Vvi8g1361 490 MobiDBLite consensus disorder prediction 399 429 - -
Vvi8g1361 490 SUPERFAMILY Ankyrin repeat 277 361 IPR036770 -
Vvi8g1361 490 FunFam regulatory protein NPR5 isoform X1 4 201 - -
Vvi8g1361 490 ProSiteProfiles BTB domain profile. 25 115 IPR000210 GO:0005515
Vvi8g1361 490 Pfam Domain of unknown function (DUF3420) 203 260 IPR024228 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1361 Vvi-Chr8 19658506 19660840 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vvi8g1361 BTB 1.4e-13 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1361 K14508 - vvi:100241869 919.072