Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1320 ATGGGCATGTCAACAGAGTCCCAATTTCATGTGCTAGCTGTTGATGACAGCCTTATCGATAGAAAATTGATTGAGAAGCTCCTCAAGAACTCATCCTATCAAGTAACTACAGTTGATTCTGGTAGCAAGGCCCTTGAATTTCTGGGTTTGCATGAAAATGACCCAAACACACCTTCCGTTTCTCCAAACAGTCATCAGGAAGTGGAGGTGAATCTTATAATTACTGACTACTGTATGCCTGGAATGACAGGCTATGATTTACTCAAAAAAATCAAGGAATCTTCATCTTTGAGAAATATACCAGTAGTGATCATGTCATCTGAGAATGTGCCTTCAAGGATCACCAGATGCTTAGAAGAAGGAGCAGAAGAATTTTTTCTGAAACCAGTTCAGATATCAGATGTGAATCGGCTTAAACCTCATATGATGAAAGCCAAAAGTAAGGATCAACAACAAGAAAATGAAGAGAAGCAAGAAAAACAAGAAGAAGAATCAAAAGAAACAGAAAAATCAGAGCCTGAATCACAACAACCACAGCAGCAGCAACAACAACAACAACAGCAACAACAATCCAATAATAATAAGAGAAAGGCCATAGAAGAAGGGCTTTCACCAGATAGAACAAGACCCAGATATAGTGGCCTCACTGTGGTCTGA 657 0.3927 MGMSTESQFHVLAVDDSLIDRKLIEKLLKNSSYQVTTVDSGSKALEFLGLHENDPNTPSVSPNSHQEVEVNLIITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQISDVNRLKPHMMKAKSKDQQQENEEKQEKQEEESKETEKSEPESQQPQQQQQQQQQQQQSNNNKRKAIEEGLSPDRTRPRYSGLTVV* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1320 218 MobiDBLite consensus disorder prediction 142 173 - -
Vvi8g1320 218 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 187 IPR045279 GO:0009736
Vvi8g1320 218 SUPERFAMILY CheY-like 8 156 IPR011006 -
Vvi8g1320 218 Pfam Response regulator receiver domain 11 134 IPR001789 GO:0000160
Vvi8g1320 218 SMART REC_2 9 142 IPR001789 GO:0000160
Vvi8g1320 218 CDD REC_typeA_ARR 11 138 - -
Vvi8g1320 218 MobiDBLite consensus disorder prediction 142 218 - -
Vvi8g1320 218 MobiDBLite consensus disorder prediction 174 198 - -
Vvi8g1320 218 ProSiteProfiles Response regulatory domain profile. 10 143 IPR001789 GO:0000160
Vvi8g1320 218 Gene3D - 10 210 - -
Vvi8g1320 218 Coils Coil 142 172 - -
Vvi8g1320 218 Coils Coil 181 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1320 Vvi-Chr8 19338341 19339854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1320 1 216 Response Regulator Gene Family AT3G57040 64.069 1.53e-99 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi8g1320 Response_reg 1.7e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1320 K14492 - vvi:100243627 333.954