Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1312 ATGCTAGCATTCTCCCCTCCATTGTTTTCAACCTTTGGTTGGCCCTGGGAGGATCCCATAAGCCATGAACAGAACTACATCTATCAAGAAACAGAAGCTTCAGAATCATTTCTTCACTTGCCCTCATCTGAGCCACAAGCTGAACTCAATTATTCCACACCATCTGCAGCAGTTAGTGGCAATCCCACGATGGTTAAGAAACTTAACCACAACGCAAGTGAGCGGGATCGTCGTAAGAAGATCAACAGCTTATACTCCTCTCTGCGTTCACTCCTTCCAGCAGCAGATCAAGCGAAATTAAGCATTCCTTCCACAGTTTCACGGGTGCTGAAATACATACCAGAACTACAAAAGCAAGTGGAGAGACTGATACAAAAGAAGGAAGAGCTTTTATCAAAGATTTCTAGGCAAGGAGATATAATTCACCAAGAGAAGCAAAGAAAGGCCACACTTGCAAGCTCTTTATCTGCTGTTTCAGCAAACAGGCTCAGTGACAGGGAAATTGTGGTTCAGATATCCACATTTAAGGTCCATGAGAGTCCATTATCAGAGGTTCTGCTAAATTTGGAGGAGGATGGGCTTCTAGTAATCAATGCATCATCTTTTGAGTCCTTTGGAGGGAGGGTCTTCTACAATTTACATCTTCAGGTGGAAGGAACTCATAGAATGGAGTGCGAGGTGTTGAGTGAGAAGCTCCTTTCATTGTGTGAGAAGAGAAGAGACGCTTTTCCATGA 735 0.4367 MLAFSPPLFSTFGWPWEDPISHEQNYIYQETEASESFLHLPSSEPQAELNYSTPSAAVSGNPTMVKKLNHNASERDRRKKINSLYSSLRSLLPAADQAKLSIPSTVSRVLKYIPELQKQVERLIQKKEELLSKISRQGDIIHQEKQRKATLASSLSAVSANRLSDREIVVQISTFKVHESPLSEVLLNLEEDGLLVINASSFESFGGRVFYNLHLQVEGTHRMECEVLSEKLLSLCEKRRDAFP* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1312 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 116 IPR011598 GO:0046983
Vvi8g1312 244 Coils Coil 113 137 - -
Vvi8g1312 244 FunFam Transcription factor ORG2 61 157 - -
Vvi8g1312 244 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 62 235 - -
Vvi8g1312 244 SMART finulus 71 122 IPR011598 GO:0046983
Vvi8g1312 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 135 IPR036638 GO:0046983
Vvi8g1312 244 Gene3D - 60 156 IPR036638 GO:0046983
Vvi8g1312 244 Pfam Helix-loop-helix DNA-binding domain 66 117 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1312 Vvi-Chr8 19236452 19238185 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1312 1 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 49.606 4.26e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi8g1312 HLH 7.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1312 - - vvi:100262373 465.692