LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi8g1303	ATGGGGGATAAAGAGAAGCAGGAGAGAGATTCGGAGTTTTTGTTTGTCATTGAGGATGACGGTGGTGATGATGTAGTGAACAGGATTGAGAGTAGTAGCGGTGATGAAGAGGTTGCTTATGGCGACGAAGGTTATACTTCGCCTTCTGTCGTTTTCTCTTCGCAGCAATGGCCGCAGAGTTACAGAGAGACAACTGATTCCTACACAATCGCTGCATCACCAAATTTTGGAATTCTTGGATCTTCACTTGGTCTTAGGCGTTCAAGTCTTGACATCTTTACCAAGAGTAATTTGGACTTGGATGGAAAAACTCCTTTGCTGACTGAACAAGAAAAAAATTATCAAAAAGAAGACACAGATAGGATCTCAAGGACACAGTTATCATTGTCAGAGAAGGCTTCCTTTCATGAACAACTTACTGGAGAACTGCCCATTAGTTATGGATGTAGCTTCACTCAGACTGTCTTCAATGGGGTAAATGTACTGGCTGGAATTGGACTTCTATCTACACCTTATGCGGTAAAAGAGGCTGGATGGGCAAGTTTGGCTGTTCTGGTTCTTTTTGCAGTTGTGTGTTGTTATACAGCCTCTCTCTTGAGATACTGCCTTGAGAGCAAAGAAGGCATCATCACCTATCCTGACATTGGGGAAGCTGCATTTGGAAGATATGGACGTCTTTTTGTTTCTTTTGTTTTATACACAGAATTATATTCATACTGTGTGGAATTTATTATTTTGGAGGGGGATAATCTGACCAGGCTATTTCCTGGAGCATCCTTGAATTGGGGTGGTTTTCAGCTCGACTCTTTGCACTTATTCGGGATTTTAACTGCCCTTATTGTTCTACCAACTGTTTGGTTGAGGGATCTCCGGGTGATTTCATGCCTTTCAGCTGGTGGGGTCCTTGCAACAGTGTTGATAGTTGTTTCTGTGATTTTTGTTGGTATAACAGCTGGAATTGGGTTCCATCAAACTGGTAAATTGGTGAACTGGGGTGGTATTCCATTCTCTATTGGTGTATATGGATTTTGCTTTTCTGGGCATACTGTGTTTCCAAATATCTACCAATCAATGGCTGATAAAACAAAATTTAGCAAGGCATTGATAGTAAGTATTCTTTTGTGTGTGATAATATATGGAGGTATTGCAATCGTTGGATTCCTGATGTTTGGCCAAGGTACAATGTCCCAGATTACCCTGAATATTCCAAGGCACGTCTTTGCTTCCAAAATTGCATTATGGACAACAGAGCTGCTCCCAGTCAGAATTTCAAATAGTTTCTGGTGTTTTATTCTTCTAAGAACAGCACTGGTCATTTCTTCCGTCTGTGTTGCTTTTCTTCTTCCCTTTTTTGGTCTTGTGATGTCTTTAATCGGTTCTCTTCTCAGTGTACTAGTGTCTGTGATAATTCCGACTTTATGTTACCTACGAATTATGGGGAATAAGGCAACAAAAGCACAGGTTATAGTGAGCAGTGGAGTTGCTGCTTTGGGCGTCATTTGTGCAATCCTGGGAACGTATTCATCGCTATCACAAATCGCGAGGCAGTACTAA	1554	0.4138	MGDKEKQERDSEFLFVIEDDGGDDVVNRIESSSGDEEVAYGDEGYTSPSVVFSSQQWPQSYRETTDSYTIAASPNFGILGSSLGLRRSSLDIFTKSNLDLDGKTPLLTEQEKNYQKEDTDRISRTQLSLSEKASFHEQLTGELPISYGCSFTQTVFNGVNVLAGIGLLSTPYAVKEAGWASLAVLVLFAVVCCYTASLLRYCLESKEGIITYPDIGEAAFGRYGRLFVSFVLYTELYSYCVEFIILEGDNLTRLFPGASLNWGGFQLDSLHLFGILTALIVLPTVWLRDLRVISCLSAGGVLATVLIVVSVIFVGITAGIGFHQTGKLVNWGGIPFSIGVYGFCFSGHTVFPNIYQSMADKTKFSKALIVSILLCVIIYGGIAIVGFLMFGQGTMSQITLNIPRHVFASKIALWTTELLPVRISNSFWCFILLRTALVISSVCVAFLLPFFGLVMSLIGSLLSVLVSVIIPTLCYLRIMGNKATKAQVIVSSGVAALGVICAILGTYSSLSQIARQY*	518

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi8g1303	517	FunFam	Amino acid transporter AVT1A	147	516	-	-
	Vvi8g1303	517	Pfam	Transmembrane amino acid transporter protein	426	508	IPR013057	-
	Vvi8g1303	517	Pfam	Transmembrane amino acid transporter protein	150	406	IPR013057	-
	Vvi8g1303	517	PANTHER	OS05G0424000 PROTEIN-RELATED	154	498	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi8g1303	Vvi-Chr8	19123145	19127498	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi8g1303	53	457	Amino Acid or Auxin Permease AAAP Family	AT2G41190	63.380	0.0	543

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi8g1303	K15015		-	vvi:100265815	969.148