Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1299 ATGGGTAGTAGAACAGTGAAGGTTGGTGCGGAAGATGTTAGCAAAGTCACGCCCGGGATGCCGAGCTTCATTCCTCAGATACCCATATCCAATTCCATTGGCACAGAGGGAAACAATATTCGCTCTCGAATTTCAGATTTTGGGGCGCTGGAGCAGTCCCTTGGATTTCGTATAGAGGATGCTGTTGATCTTAGTAGAAATTCTGTATTCAATTCAGCAAAGCCAAGTAGCCAGGCACCAAGTACCGACCTCCAATTTGGCGCTCTAAATAAGACATCAACAGTACAAAAGGAACTACAACAAAATATAGCTTCTGTTTCTGGTAGTCATCGTGAGAACTGGGGAGAGTCCAATATGGCAGATGCCAGTCCGAGGACTGATACCTCAACAGATGTGGACACGGATGAAAAGAATCAAAGGTTTGAAATGGGTCAATCAGCTGCTCTTGTGGCCTCTGATTCGAGTGACAGATCAAAAGAAAAAGCCGGTGATCAGAAGACATTACGCCGGCTTGCTCAAAATCGTGAAGCTGCCAGAAAAAGCCGATTAAGGAAAAAGGCATATGTGCAACAGCTGGAGAATAGTCGGATGAAGCTGACCCAACTTGAACAAGAGCTCCAGCGAGCCCGCCAGCAGGGCATATTCATTTCAAGCTCAGGAGACCAATCCCATTCAATGAGTGGAAATGGGGCCTTGGCATTTGATGTAGAATATGCTCGGTGGCTAGAAGAGCACAACAGGCAAATAAATGAACTGCGATCGGCTGTCAATTCACATGCAAGTGACACTGAACTTCGCACAATTGTGGACAATGTTACAGCACATTTTGACGACATTTTCAGGTTGAAAGGCATTGCAGCCAAGGCTGATGTCTTCCACATCCTGTCAGGAATGTGGAAGACACCTGCAGAACGGTGTTTTATGTGGATTGGCGGTTTCCGTTCATCTGAAGTCCTCAAGCTTCTTGTAAACCAATTGGAGCCTCTAACGGAGCAACAGTTGATGAGCATCTACAACTTGCAGCAGTCATCCCAACAGGCGGAGGATGCTCTCTCCCAAGGGATGGAGGCCTTGCAACAATCTCTGGCTGAGACGTTAACCAGTGGCTCACCTGGCCCATCTGGATCATCAGGGAATGTGGCAAACTATATGGGCCAGATGGCCATGGCAATGGGTAAGCTAGGGACTCTTGAGGGATTTCTTCGTCAGGCTGATAATCTGCGCCAGCAGACGCTACAGCAGATGCACCGTATATTGACAACCCGGCAGTCTGCACGTGCTCTTCTTGCAATAAATGACTACTTCTCCCGACTTCGAGCCCTCAGCTCTCTGTGGCTTGCGCGGCCACGGGAATGA 1356 0.4823 MGSRTVKVGAEDVSKVTPGMPSFIPQIPISNSIGTEGNNIRSRISDFGALEQSLGFRIEDAVDLSRNSVFNSAKPSSQAPSTDLQFGALNKTSTVQKELQQNIASVSGSHRENWGESNMADASPRTDTSTDVDTDEKNQRFEMGQSAALVASDSSDRSKEKAGDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRMKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGALAFDVEYARWLEEHNRQINELRSAVNSHASDTELRTIVDNVTAHFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSEVLKLLVNQLEPLTEQQLMSIYNLQQSSQQAEDALSQGMEALQQSLAETLTSGSPGPSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1299 451 Coils Coil 185 212 - -
Vvi8g1299 451 Gene3D - 165 216 - -
Vvi8g1299 451 Coils Coil 242 262 - -
Vvi8g1299 451 SMART brlzneu 162 225 IPR004827 GO:0003700|GO:0006355
Vvi8g1299 451 Pfam bZIP transcription factor 166 207 IPR004827 GO:0003700|GO:0006355
Vvi8g1299 451 SUPERFAMILY Leucine zipper domain 166 209 IPR046347 GO:0003700|GO:0006355
Vvi8g1299 451 CDD bZIP_HBP1b-like 166 218 - -
Vvi8g1299 451 MobiDBLite consensus disorder prediction 154 178 - -
Vvi8g1299 451 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 169 184 IPR004827 GO:0003700|GO:0006355
Vvi8g1299 451 MobiDBLite consensus disorder prediction 105 184 - -
Vvi8g1299 451 ProSiteProfiles DOG1 domain profile. 231 448 IPR025422 GO:0006351|GO:0043565
Vvi8g1299 451 FunFam BZIP family transcription factor 165 214 - -
Vvi8g1299 451 Pfam Seed dormancy control 248 323 IPR025422 GO:0006351|GO:0043565
Vvi8g1299 451 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 164 208 IPR004827 GO:0003700|GO:0006355
Vvi8g1299 451 PANTHER TRANSCRIPTION FACTOR TGA9 101 451 - -
Vvi8g1299 451 MobiDBLite consensus disorder prediction 105 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1299 Vvi-Chr8 19088322 19098254 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1299 119 451 bZIP Transcription Factor Family AT3G12250 77.477 2.31e-180 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi8g1299 DOG1 1.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1299 K14431 - vvi:100252149 845.114