Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1298 ATGATCAGATTTATCTCGCTTTTTCTCAACCAATTCCCAGAGCATTTTCACTTGATCTCCTCGTACGGTGCGTTCACCTGGTCACCCGAGCAATATCTAACGCTAAGTAACAGAGGGATGGCAGTAGACACAATGGTACAGATTGATGAGCTCCTCTTCACAGCTCTGGTCTTTCTAGTGACAAATTTTTTTGTTAAACGCATAACCTCCATGTCTAGGTCTAGTCGCCGGCTGCCGCCAGGACCCAGAGGGTGGCCAGTGGTCGGTTGCTTGCCGCTCCTAGGGGCCATGCCGCATGTGGCACTTGCCCAGTTGGCTCAAAAGTATGGAGCCATCATGTACCTAAAGCTAGGCACATGTGACGTGGTGGTTGCATCGAAGCCAGATTCGGCTCGAGCTTTTTTGAAAACTTTGGACTTAAATTTCTCCAACCGTCCACCGAATGCAGGTGCCACCCACATCGCGTATGAAGCACAAGATTTTGTGTTTGCAGACATTGGGCCACGGTGGAACTTGCTAAGGAAGCTGACCAGTTTGCATATGCTGGGTGCCAAGTCTTTCAAAGATTGGGGTGCCATCAGGGGAGCCGAGATTGGACACATGATCCAAGCCATGTGTGAGTTGAGCAGGCGGGGCGAGCCCGTGGTGGTGCCAGAGATGGTGTCATGCGCTCTTGCAAATATAATTGGGCAGAAAAGTCTGAGTCGTCGAGTGTTTGAGACACAGGGGTCGGAGTCTAATGACTTCAAGGAAATGGTGGTTGAGCTTATGAGATTGGCAGGGTTGTTTAATGTTGGCGATTTCATACCATCGATTGCGTGGATGGACCTGCAAGGAACTGAGGGGAAAATGAAGCTTTTGCACAACAAGTTTGATGCATTACTCACAAGGATGATCGAGGAGCACTCGGCAACTGCCCATGAGCGCCTGGGAAATCCAGATATCCTCGATGTTGTTATGGCCGAACAAGAGTATTCGGGCGGCGTGAAGCTGTCCATGGTCAATATCAAAGCCCTTCTCTTGAATTTATTTATTGCTGGCACTGATACATCATCGGGCACCATTGAATGGGCGCTAGCAGAGATTTTAAAGAACCCCACCATGCTCAAGCGCGCACATGCAGAGATGGACCGAGTCATTGGAAAGAATCGTTTGCTTCAAGAGTCGGATGTTCCAAAACTCCCCTACCTGGAAGCAATTTGTAAGGAAACATTTCGAAAGCACCCATCAGTGCCACTCAATATTCCAAGGGTGTCAGCCAATGCTTGTGAGGTCGATGGTTACTACATACCTGAAGACACTAGGCTCTTTGTCAATGTATGGGCAATCGGGCGCGACCCAGAAGTGTGGGAAAATCCACTGGAGTTCAAGCCAGAAAGGTTTTTGAGCGAAAAGAATGCAAGAATCAGCCCATGGGGGAATGACTTTGAGCTCCTACCATTCGGGGCAGGGCGAAGGATGTGCGCAGGCATAAGAATGGGAATTGAGGTTGTAACGTATGCCCTGGGAACGCTGGTACATTCATTTGACTGGAAGCTCCCAAAGGGGGATGAGCTCAACATGGATGAGGCCTTCGGGCTGGTGCTGCAAAAGGCTGTGCCGCTCTCAGCCATGGTCACCCCTCGGCTACATCCAAGCGCGTATAAGGCTCAGGTATGA 1659 0.4997 MIRFISLFLNQFPEHFHLISSYGAFTWSPEQYLTLSNRGMAVDTMVQIDELLFTALVFLVTNFFVKRITSMSRSSRRLPPGPRGWPVVGCLPLLGAMPHVALAQLAQKYGAIMYLKLGTCDVVVASKPDSARAFLKTLDLNFSNRPPNAGATHIAYEAQDFVFADIGPRWNLLRKLTSLHMLGAKSFKDWGAIRGAEIGHMIQAMCELSRRGEPVVVPEMVSCALANIIGQKSLSRRVFETQGSESNDFKEMVVELMRLAGLFNVGDFIPSIAWMDLQGTEGKMKLLHNKFDALLTRMIEEHSATAHERLGNPDILDVVMAEQEYSGGVKLSMVNIKALLLNLFIAGTDTSSGTIEWALAEILKNPTMLKRAHAEMDRVIGKNRLLQESDVPKLPYLEAICKETFRKHPSVPLNIPRVSANACEVDGYYIPEDTRLFVNVWAIGRDPEVWENPLEFKPERFLSEKNARISPWGNDFELLPFGAGRRMCAGIRMGIEVVTYALGTLVHSFDWKLPKGDELNMDEAFGLVLQKAVPLSAMVTPRLHPSAYKAQV* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1298 552 PRINTS P450 superfamily signature 479 488 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1298 552 PRINTS P450 superfamily signature 346 363 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1298 552 PRINTS P450 superfamily signature 399 410 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1298 552 PANTHER CYTOCHROME P450 703A2-RELATED-RELATED 50 549 - -
Vvi8g1298 552 Pfam Cytochrome P450 79 530 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1298 552 SUPERFAMILY Cytochrome P450 79 542 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1298 552 Gene3D Cytochrome P450 63 539 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1298 552 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 481 490 IPR017972 GO:0005506|GO:0016705
Vvi8g1298 552 PRINTS E-class P450 group I signature 355 381 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1298 552 PRINTS E-class P450 group I signature 398 416 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1298 552 PRINTS E-class P450 group I signature 106 125 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1298 552 PRINTS E-class P450 group I signature 130 151 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1298 552 PRINTS E-class P450 group I signature 439 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1298 552 PRINTS E-class P450 group I signature 478 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1298 552 PRINTS E-class P450 group I signature 488 511 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1298 552 PRINTS E-class P450 group I signature 335 352 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1298 552 FunFam Flavonoid 3',5'-hydroxylase 2 70 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1298 Vvi-Chr8 19083201 19087784 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1298 52 548 Cytochrome P450 AT5G07990 44.618 1.12e-164 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1298 K13083 - vvi:100247021 1018.45