Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1288 ATGTCACAAGAAGCTGTAGAGATAAAGACGACCATTGAGCAGTGGAGATGGTCAGAAATGCAGGGTCTGGAGTTGGTGTCTCCCAATACTGACGACTTTAAAAGCCACCCAACAGCATCTAGAGTTTCAAAGTCGTCTGCAGAGGGGGGAGAGGCAAGAGATATGGATGGCACTGAGCCCAAGAATCAGCCTCAGCCTCAGCCTCAACCTCAAGCACAAGCTCAAGCTCATGCTAGTGGCAGTGGGGAGAAGACTGAGCTTGTTCCTTCATCTGGGTTTGGCGAGCTTTTTCGATTCGCAGATGGGTTGGATTATGTTCTGATGACAATTGGGTCTATTGGAGCCATCGTACATGGATCTTCTCTCCCAATTTTCCTTCGTTTTTTCGCCGATCTCGTCAATTCCTTCGGGTCTAATGCCAACAATATTGATAAGATGATGCAAGAAGTTCTCAAGTATGCATTTTACTTCCTTGTTGTGGGTGCTGCAATATGGGCGTCTTCATGGGCAGAGATATCGTGTTGGATGTGGACCGGAGAGAGGCAATCCACCAAGATGAGGATCAAGTACCTAGAAGCGGCTTTGAACCAGGACATTCAGTTTTTTGACACCGAGGTTCGGACCTCCGACGTCGTTTTTGCCGTTAATACCGATGCAGTGATGGTTCAAGATGCCATTAGCGAGAAGTTGGGTAATTTCATTCACTACATGGCAACATTTGTGTCTGGATTTGTAGTGGGTTTCACTGCTGTGTGGCAATTGGCACTTGTCACTCTTGCTGTGGTTCCTCTGATTGCTGTAATTGGCGGCATCCACACCGCCACATTGGCCAAGCTCTCTGCCAAGAGCCAGGAGGCTCTTTCAGAGGCGGGGAACATTGCAGAACAGACGATAGTTCAAATTCGGGTTGTTTTCGCATTTGTTGGAGAATCCAGAGCATTACAAGCCTACTCCGCAGCCTTGAGGATCTCTCAGAGGCTTGGTTACAAGAGCGGATTTTCCAAGGGAATGGGATTGGGTGCAACATACTTCACTGTTTTCTGTTGTTATGCTCTTCTGCTCTGGTATGGGGGTTATCTTGTTCGGCACCATTACACCAATGGAGGACTAGCCATCGCCACCATGTTCTCTGTCATGCTTGGCGGACTCGCTCTGGGGCAGTCTGCACCGAGCATGTCAGCCTTTGCCAAGGCAAAAGTTGCCGCTGCAAAAATTTTCCGTATAATTGACCACAAGCCAAATATTGAGAGAAATGGCGAAACGGGTCTGGAATTGGAATCAGTTACAGGACAAGTAGAGCTGAAAAATGTAGATTTCTCCTACCCATCAAGGCCAGAGGTTCGGATCCTCAGTGATTTTTCCCTAAACGTCCCAGCCGGAAAGACCATCGCCCTTGTAGGAAGCAGTGGCTCTGGAAAGAGCACTGTGGTCTCTCTCATTGAGAGATTCTATGATCCCACCTCAGGACAAGTTCTGCTAGATGGGCATGACATAAAGACATTAAAGCTGAGGTGGCTGAGGCAACAAATTGGGCTAGTGAGCCAAGAGCCTGCTCTGTTTGCTACCACCATTAAAGAAAATATGCTCTTGGGTAGGCCTGACGCAACCTTAGTTGAGATTGAAGAAGCTGCCAGAGTTGCTAATGCCTATTCATTCATAGTGAAGCTTCCCGAAGGCTTTGACACTCAGGTAGGGGAGAGAGGATTCCAGCTCTCAGGAGGGCAGAAGCAAAGAATAGCTATAGCAAGAGCAATGCTTAAGAATCCAGCAATCCTGCTCTTAGATGAGGCAACAAGCGCATTGGACTCTGAGTCAGAAAAGCTAGTGCAAGAGGCCCTTGACCGTTTCATGATCGGGAGGACAACTCTTGTCATTGCCCACCGACTCTCAACCATTCGCAAGGCTGACCTTGTAGCTGTACTCCAGCAGGGGAGTGTCTCTGAGATTGGAACCCATGATGAGCTCATAGCCAAAGGAGAAAATGGTGTATATGCAAAGCTCATCAGAATGCAGGAGACAGCGCATGAAACCGCTCTGAGTAACGCCAGAAAGAGTAGTGCAAGGCCTTCTAGTGCTAGAAATTCAGTAAGCTCACCAATAATTGCCAGGAACTCCTCCTATGGTCGATCACCTTATTCACGCCGGCTATCTGACTTCTCTACTTCTGATTTTAGTCTTTCCCTTGATGCATCACATCCCAATTATCGCCTGGAAAAGCTTGCCTTCAAGGAGCAAGCCAGTTCCTTCTGGCGCCTTGCAAAAATGAACTCTCCAGAATGGGTTTATGCTTTATTTGGTACTATAGGCTCTGTTGTTTGTGGCTCCATTAGCGCCTTCTTTGCCTATGTTCTGAGTGCTGTCCTTAGCGTGTATTACAATCAGAACCATGCTTACATGAGCAAACAAATTGGAAAGTATTGCTATCTGTTAATTGGGGTTTCGTCGGCTGCGCTTCTCTTCAACACACTGCAACATTTCTTTTGGGATGTAGTGGGAGAAAATCTTACAAAACGGGTGAGAGAGAAAATGTTGGCAGCAGTGCTGAAGAATGAAATGGCATGGTTTGATCAGGAAGAGAATGAGAGTGCTAGGATTGCTGCTAGACTGGCTCTTGATGCCAATAATGTTAGGTCAGCCATTGGCGATCGGATTTCAGTGATCATGCAAAACTCAGCACTCATGCTAGTTGCCTGCACTGCAGGGTTTGTTTTACAGTGGCGCCTTGCCCTTGTCCTCATAGCCGTCTTCCCTGTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGCAAGGTTTCTCTGGAGATCTAGAAGGTGCCCATGCCAAGGCTACACAATTAGCAGGAGAAGCCATAGCCAATGTGAGAACAGTTGCTGCATTCAATTCAGAAGCAAAAATTGTGGGTCTTTTCTCCACCAACCTCCAAACCCCACTACGGCGCTGTTTTTGGAAGGGACAGATAGCTGGAAGTGGATATGGGATAGCCCAATTCTTACTTTATGCTTCCTATGCTCTCGGTCTTTGGTATGCCTCCTGGCTTGTGAAGCATGGGATCTCTGATTTCTCAAAGACAATCAGGGTTTTCATGGTCCTCATGGTCTCTGCCAATGGTGCGGCTGAAACACTGACCCTGGCTCCCGACTTCATCAAGGGTGGCCGAGCCATGCGATCAGTGTTTGACCTTCTTGACCGCAAAACTGAAATTGAGCCCGATGATCCAGATGCCATTCCAGTTACCGATCGTCTTCGGGGTGAAGTGGAACTCAAGCACGTAGACTTCTCTTATCCCTCACGCCCTGATGTGCCAGTTTTCCGTGACCTTTGTCTTCGTGCCCGAGCAGGCAAGACTCTTGCGCTTGTTGGTCCAAGTGGGTGTGGCAAGAGTTCAGTTATTGCTCTTGTTCAGAGATTCTATGAGCCAACTTCTGGACGCGTGATGATTGATGGGAAGGACATTAGAAAATACAATCTCAAGTCATTGCGAAGGCACATAGCAATAGTTCCCCAGGAGCCATGCCTCTTTGCTACAACCATTTATGAAAACATTGCTTATGGACACGAGTCAGCAACTGAGGCTGAGATAATTGAAGCCGCCACCTTGGCTAATGCCCACAAGTTCGTATCTGCATTGCCTGATGGCTACAAAACATTTGTAGGTGAAAGGGGGGTTCAACTGTCTGGAGGACAGAAGCAGCGAATTGCAATTGCTAGGGCTTTTCTAAGGAAGGCAGAACTTATGCTGCTAGATGAGGCAACGAGTGCTCTTGATGCTGAGTCAGAAAGATGCATCCAGGAGGCTCTAGAGCGCGCTTGCTCGGGGAAGACCACCATTGTGGTTGCTCACCGGTTATCAACAATAAGAAATGCCCATACCATTGCTGTAATTGATGATGGGAAAGTGGCGGAGCAAGGATCCCATTCACATCTATTGAAAAATTATCCTGATGGGTGTTATGCCCGAATGATACAGTTACAGAGGTTCACTCATGGGCAGGCTGTGGGAATGGCTTCAGGTTCAAGTTCTTCAACAAGACCCAGAGACGAAGAGGAGAGAGAAGGCTAG 4065 0.4768 MSQEAVEIKTTIEQWRWSEMQGLELVSPNTDDFKSHPTASRVSKSSAEGGEARDMDGTEPKNQPQPQPQPQAQAQAHASGSGEKTELVPSSGFGELFRFADGLDYVLMTIGSIGAIVHGSSLPIFLRFFADLVNSFGSNANNIDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALNQDIQFFDTEVRTSDVVFAVNTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIHTATLAKLSAKSQEALSEAGNIAEQTIVQIRVVFAFVGESRALQAYSAALRISQRLGYKSGFSKGMGLGATYFTVFCCYALLLWYGGYLVRHHYTNGGLAIATMFSVMLGGLALGQSAPSMSAFAKAKVAAAKIFRIIDHKPNIERNGETGLELESVTGQVELKNVDFSYPSRPEVRILSDFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIKENMLLGRPDATLVEIEEAARVANAYSFIVKLPEGFDTQVGERGFQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQETAHETALSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHPNYRLEKLAFKEQASSFWRLAKMNSPEWVYALFGTIGSVVCGSISAFFAYVLSAVLSVYYNQNHAYMSKQIGKYCYLLIGVSSAALLFNTLQHFFWDVVGENLTKRVREKMLAAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIMQNSALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMQGFSGDLEGAHAKATQLAGEAIANVRTVAAFNSEAKIVGLFSTNLQTPLRRCFWKGQIAGSGYGIAQFLLYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDAIPVTDRLRGEVELKHVDFSYPSRPDVPVFRDLCLRARAGKTLALVGPSGCGKSSVIALVQRFYEPTSGRVMIDGKDIRKYNLKSLRRHIAIVPQEPCLFATTIYENIAYGHESATEAEIIEAATLANAHKFVSALPDGYKTFVGERGVQLSGGQKQRIAIARAFLRKAELMLLDEATSALDAESERCIQEALERACSGKTTIVVAHRLSTIRNAHTIAVIDDGKVAEQGSHSHLLKNYPDGCYARMIQLQRFTHGQAVGMASGSSSSTRPRDEEEREG* 1355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1288 1354 Gene3D ABC transporter type 1, transmembrane domain 155 1060 IPR036640 GO:0005524|GO:0016020
Vvi8g1288 1354 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1087 1323 IPR003439 GO:0005524
Vvi8g1288 1354 MobiDBLite consensus disorder prediction 68 86 - -
Vvi8g1288 1354 FunFam ABC transporter B family member 19 1053 1075 - -
Vvi8g1288 1354 Gene3D - 1078 1332 IPR027417 -
Vvi8g1288 1354 CDD ABC_MTABC3_MDL1_MDL2 1087 1326 - -
Vvi8g1288 1354 ProSitePatterns ABC transporters family signature. 571 585 IPR017871 GO:0005524|GO:0016887
Vvi8g1288 1354 ProSitePatterns ABC transporters family signature. 1226 1240 IPR017871 GO:0005524|GO:0016887
Vvi8g1288 1354 MobiDBLite consensus disorder prediction 1334 1354 - -
Vvi8g1288 1354 FunFam ABC transporter B family member 1 743 1052 - -
Vvi8g1288 1354 SUPERFAMILY ABC transporter transmembrane region 751 1072 IPR036640 GO:0005524|GO:0016020
Vvi8g1288 1354 CDD ABC_MTABC3_MDL1_MDL2 432 671 - -
Vvi8g1288 1354 PANTHER ABC TRANSPORTER B FAMILY 71 776 IPR039421 -
Vvi8g1288 1354 FunFam ABC transporter B family member 1 95 431 - -
Vvi8g1288 1354 CDD ABC_6TM_Pgp_ABCB1_D1_like 108 393 - -
Vvi8g1288 1354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 671 IPR027417 -
Vvi8g1288 1354 SMART AAA_5 459 645 IPR003593 GO:0016887
Vvi8g1288 1354 SMART AAA_5 1114 1306 IPR003593 GO:0016887
Vvi8g1288 1354 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 764 1051 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi8g1288 1354 Gene3D - 430 695 IPR027417 -
Vvi8g1288 1354 Pfam ABC transporter 450 599 IPR003439 GO:0005524
Vvi8g1288 1354 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 110 397 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi8g1288 1354 FunFam ABC transporter B family member 1 1078 1327 - -
Vvi8g1288 1354 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 432 668 IPR003439 GO:0005524
Vvi8g1288 1354 CDD ABC_6TM_Pgp_ABCB1_D2_like 753 1069 - -
Vvi8g1288 1354 Pfam ABC transporter 1108 1254 IPR003439 GO:0005524
Vvi8g1288 1354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1079 1326 IPR027417 -
Vvi8g1288 1354 Pfam ABC transporter transmembrane region 765 1034 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi8g1288 1354 Pfam ABC transporter transmembrane region 109 380 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi8g1288 1354 FunFam ABC transporter B family member 1 422 672 - -
Vvi8g1288 1354 MobiDBLite consensus disorder prediction 31 45 - -
Vvi8g1288 1354 SUPERFAMILY ABC transporter transmembrane region 96 416 IPR036640 GO:0005524|GO:0016020
Vvi8g1288 1354 MobiDBLite consensus disorder prediction 27 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1288 Vvi-Chr8 18985542 18991889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1288 93 1348 Calmodulin-binding Proteins AT2G36910 88.226 0.0 2278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1288 K05658 - vvi:100262262 2541.53