Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1287 ATGGCTACATCTATAGTCTACAGATCCCCTCGTCCACATGTCGATATACCAAATGATCCAAGCATTTCCATGCTCTCTTTCCTTTTCAGAAAAACCTCATCATTTTCTACTAGGCTCGCCCTCGTCGACTCCGACTCCGGCGAAACACTGACCTTCTTCCAGCTCAAGTCCACCGTCTCCAGGCTTGCTCACAGCTTTGCCCAATTAGGCATCACCAAAAACGACGTCGTTCTCATTTTTGCTCCCAACTCGGTCCGCTTCCCCGTTTGCTTCCTCGCCATCGTCGCTCTTGGAGCAATCGCCACCACAGCTAATCCTCTTTACACCATTTCGGAGCTTTCCAAGCAAGTCAAAGACTCCAACCCTAAATTCGTTATCAATCTTTGGGATAAGGTCAAGAATTTCGATTTAACATTTGTGATTTTGAGTTCTTCAGCGTCTCAGAGACTCCCAAGTTCGAATTCCAGGGTCTGGTACTATTCCGATTTGATTAAAACGCCAGAGGACAGAGATTTGGATTTTCCGCCGGCTTCGGTGGTGCAAACAGATACCGTGGCGCTGCTGTACTCGTCGGGCACCACCGGAACGAGCAAGGGAGTGATTCTGACGCACCGCAATTTCATTGCGGCAGGGGTGATGGTGACGGCGGACCAAGCGTATTACGGCGAAAGCAGTAACGTGTTTCTATGTTTTTTGCCTATGTTTCATATATTTGGGCTGTCTGTCATATTGTATGCCCAGCTTGTGAGGGGCAACACTGTTGTAACAGTAGCGAAGTTCGAAATCGAGAAGGTTTTAAGGAGTGTAGAGAAGTATAGGGTGACTCATATGTTTGTTGTTCATCCTGTTATGATTGCTTTGGCGAAGCAGAGTGTGGTCCGGAAGTATGATTTGTCGTCACTGAGGCAAATTTGTTCCGGGGCGGCTCCTTTGGGAAAGGATGTGATGGATGATTGTGCTAAGAATGTTCCTCAAGCTGCTGTCATTCAGCTGCATCATGATTCAAAATGCACCATGTGGTATTCAAGCTCTCGTCATTCTGGTTCAACTGGCATTCTCGTTCCAAGAGTTGAATCACAAATAGTTAGTGAAGATACATTGAAGCCTCTTCCACCAAATCAATTAGGTGAAATATGGGTTCAAGGGGCAAACATGATGCAGGGTTATTTTAACAATCCACAAGCCACAAAACTGACTATAGATGAACAAGGTTGGGTACGTACAGGAGATCTTGGGTATTTTGATGAAGGGGGACAATTGTTTGTTGTGGATCGAATAAAAGAGCTTATCAAGTTTAAAGGCTTCCAGGTAGCACCAGCTGAGCTTGAAGGGCTGCTGCTTTCTCACCCTGAAATATTAGATTCTGTTGTCATCCCACTTCCAGATGTTGAAGCTGGCGAGGTCCCAATTGCATATGTAGTTCGTTCTCCCAGAAGCTCACTAACTGAAGAAGATGTTCAGAAATTTATTGCAAAACAGGTTGCACCATTCAAAAGATTACGAAGAGTAACTTTTATAAACAATGTTCCAAAGTCAGCTTCAGGAAAGATTCTCAGAAGAGAGCTCATAGAGAAAGTTCGATCCAAGATCTAA 1593 0.4495 MATSIVYRSPRPHVDIPNDPSISMLSFLFRKTSSFSTRLALVDSDSGETLTFFQLKSTVSRLAHSFAQLGITKNDVVLIFAPNSVRFPVCFLAIVALGAIATTANPLYTISELSKQVKDSNPKFVINLWDKVKNFDLTFVILSSSASQRLPSSNSRVWYYSDLIKTPEDRDLDFPPASVVQTDTVALLYSSGTTGTSKGVILTHRNFIAAGVMVTADQAYYGESSNVFLCFLPMFHIFGLSVILYAQLVRGNTVVTVAKFEIEKVLRSVEKYRVTHMFVVHPVMIALAKQSVVRKYDLSSLRQICSGAAPLGKDVMDDCAKNVPQAAVIQLHHDSKCTMWYSSSRHSGSTGILVPRVESQIVSEDTLKPLPPNQLGEIWVQGANMMQGYFNNPQATKLTIDEQGWVRTGDLGYFDEGGQLFVVDRIKELIKFKGFQVAPAELEGLLLSHPEILDSVVIPLPDVEAGEVPIAYVVRSPRSSLTEEDVQKFIAKQVAPFKRLRRVTFINNVPKSASGKILRRELIEKVRSKI* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1287 530 CDD 4CL 16 522 - -
Vvi8g1287 530 Gene3D - 4 427 IPR042099 -
Vvi8g1287 530 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 525 - -
Vvi8g1287 530 FunFam 4-coumarate--CoA ligase 2 428 529 - -
Vvi8g1287 530 SUPERFAMILY Acetyl-CoA synthetase-like 16 528 - -
Vvi8g1287 530 Pfam AMP-binding enzyme C-terminal domain 441 516 IPR025110 -
Vvi8g1287 530 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Vvi8g1287 530 Pfam AMP-binding enzyme 33 432 IPR000873 -
Vvi8g1287 530 Gene3D - 428 529 IPR045851 -
Vvi8g1287 530 FunFam Long-chain-fatty-acid--CoA ligase FadD 8 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1287 Vvi-Chr8 18961967 18973771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1287 6 530 Monolignol Biosynthesis Gene Families AT4G05160 62.243 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1287 K01904 - nnu:104604518 721.85