Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1285 ATGGGAAGAGCTCCTTGCTGTGACAAGGCAAATGTGAAGAAAGGCCCATGGTCACCTGAAGAAGACTCAAAGCTTAAGGAGTATATTGAGAAATATGGGACTGGGGGAAATTGGATTGCTCTCCCACAAAAAGCTGGTCTTAAGAGATGTGGGAAAAGCTGCAGATTGAGATGGTTGAACTATCTCAGACCCAACATTAAACATGGAGAATTCTCTGATGATGAAGATAGGATCATCTGCAGCGTCTTTGCTAGCATTGGAAGCAAGTGGTCAGTAATAGCAAATTACTTGCCGGGGAGGACTGATAACGATATCAAGAACTACTGGAACACCAAGCTGAAGAAGAAACTCATGGGGATGGTGCCTGTATCTCAGAGAAAACCCCATCAAGCTACCTTCTCTCATCATCTTCAAACCTATTCATCGTTATCATCACCTTCACATGCGGTAACAACAACAGCAACTTCATCATCATATGAAAGCAACAGCAGCAACCCTTATTACACTCCAGCAGCTCCGACCCCAACGTCATTCGCACGTCTTGAACCCATTTCATCAATCCCATCAAGCCTTTTGAACATCAACACTGGTTCCACAGCTGCTGCTGCTATTCATCCCCAGGAGGGCTTTGCGAGTCCTGTACATCATTACCAAGTGAAAGACAATCTTCTCATTGAAGCTAGTTCTAGTTCTGATGATGGGAGCGGAAGCAACCAAATCAGTCAAGGCAAAGAGCCGGAGTATGATCAGTATGGTGCTGTTGGTGGTAGATACGAGCAACTGGGTTTTCAGAATTATGTCTACACTGGGCTTGATGATCAAAACCAGAGGTTCATGATTTCAAATAGTAGTGGAGGTGGCGGTGGTAGTGGTAGTCATGGGTGGACTGATCAGAGGCCAAATGGGATGTTGGGAGAACCTCCATTAGACTTAGGTCTTGAGGAGTTTAAGCAGCTTATTAGCGCTAATCTCTGTAACAACTTTTCCTTCGATGAAAACAAGACAGAAGAAAGAGTCGTGTACTACTGA 1029 0.4461 MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDDEDRIICSVFASIGSKWSVIANYLPGRTDNDIKNYWNTKLKKKLMGMVPVSQRKPHQATFSHHLQTYSSLSSPSHAVTTTATSSSYESNSSNPYYTPAAPTPTSFARLEPISSIPSSLLNINTGSTAAAAIHPQEGFASPVHHYQVKDNLLIEASSSSDDGSGSNQISQGKEPEYDQYGAVGGRYEQLGFQNYVYTGLDDQNQRFMISNSSGGGGGSGSHGWTDQRPNGMLGEPPLDLGLEEFKQLISANLCNNFSFDENKTEERVVYY* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1285 342 Gene3D - 70 138 - -
Vvi8g1285 342 PANTHER OS09G0431300 PROTEIN 1 259 - -
Vvi8g1285 342 SMART sant 67 115 IPR001005 -
Vvi8g1285 342 SMART sant 13 64 IPR001005 -
Vvi8g1285 342 MobiDBLite consensus disorder prediction 227 249 - -
Vvi8g1285 342 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vvi8g1285 342 Gene3D - 7 68 - -
Vvi8g1285 342 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vvi8g1285 342 FunFam Transcription factor RAX3 7 68 - -
Vvi8g1285 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vvi8g1285 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vvi8g1285 342 MobiDBLite consensus disorder prediction 227 245 - -
Vvi8g1285 342 CDD SANT 16 62 IPR001005 -
Vvi8g1285 342 MobiDBLite consensus disorder prediction 283 304 - -
Vvi8g1285 342 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vvi8g1285 342 MobiDBLite consensus disorder prediction 283 297 - -
Vvi8g1285 342 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vvi8g1285 342 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1285 Vvi-Chr8 18945012 18946516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1285 1 119 MYB Transcription Factor Family AT5G57620 86.555 1.76e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi8g1285 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1285 K09422 - vvi:100267549 632.869