Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1275 ATGGATCCATTCACCGTAGACGAAGAGACGGAAGATGACGAAGAGACAGAAGGCGAAGCCGAAGACTATATTCCCGTGGAGGGGTCGACTAGGGTTTCCCAAAACGGTGCCGTTACGTCCGACCAAGCGATAAGCGTTAATGGAGGCAGCGGTGAGGTGTTGGCACTTCGGGTTTCCGACGAGGGGTTCCAAGAAGGGGGAGGTGAGATGAGAAGAGTGGAAGGAGGAGAAATTTCGGCGATGGGGTCTTCGTCGTCATCCAATGGGGGTGAGACCCAGGAGGGGTCAGACGGGTGGGTTCAGGATCAAATCGATGGTTTGTGTTGCCCTATTTGCATGGAAGCTTGGACCAGTGGCGGCGAGCATCAAGTCTGTTGTCTTCCTTGTGGGCACATATATGGCATCTCTTGCATCAAGAAATGGTTTCAACAATGTGGAAGAAGTTCTGGGAAGTGTCCTCAATGCAAAAGGAAATGCACATTGAGAAATGTTAGAACACTTTATGCATCACGGGTTGTTGCTGTGGACGAAGATCTACGAAAGAAAATTCGATCTCTTGAAGCAAAATGTGCTAGTCTTGAGAAGAAGAATGCTGATTGGTGTATGAAAGAATCTGACTGGCACAAGAGAGAGGCTGATTTACATTTACAAGTACAACAACTTATAGAGAGGACAACTTATTTGGAGCGCTTGTCAAGTGAAATGCATGGCAGAGGGTCAGGATTAGTTGCTGCAAGGGGACATAACTTTGCTGAAAATTTTGGCAGACGGGGTTCCTCTTGCAACTTTGTATTACAGAAAGAGTTGCAGGTAGATGGTGCGCGATATTTTGATATAGATGCTTCTGGTGAAATTTTGGTGATCGCTAGAAGGCTTTCTGGGACGGGAGGAACACATGTACTTACCAAAATGAGCTTGATATCTCCACATGAAATTGAAGATATTCTACTTCCTTCTGGTACAAAAGCTGTTAAGGACTTGCGTGTTTCCCCTGCTAAGTGTAGACTTGCACTTTTGGCTTCACTGGGGAAGAAATTATCAGTTCTTAGTATGGAAAGCAACAATGTTATTCTCACATATGATTTGCCAACGGCTGCTTGGTCATGTTCATGGGATCTGAACAGTTCGCATTATATGTATGCTGGATTACAGAATGGCATGCTTATGGTGTTTGATATGCGCCAAACTGCAAGGCCAATGGCAGAAATTAGTGGGCCCACAAGCAATCCCATTCATACTATACAATCTGTTCTACACAACTCAACCCTCCCATCAGGTGTTAGCACCCTTCTATCTGCTTCTTCAGTTGGTTTGTGCCAGTGGAACTTTGGTGGAAGTGAAGAGAGGCCATTTCTGGTTCCTGAAACTAAGAATCACGGAGTTTGCATATCCCTTGCTCATTGTCCGAGCAGTGATAACATTGTTTCTACTTTTCGTCCCAAAGTTGAGATGTCTAATGAGATTGCTGTTTCTCAATATTCACTTACTCCATCTGTTATGGGGCAAGGGATGCAGGGTTCCCATGTTCTTCTCAAGAGAGTGGGTGGCAATTGCTATCAAAAGTTGGGATCTTCATGTGCAAATGTAAATGATATTCGCCTGCAGAGATCTGCAATTATAGATTTACAGAGCCACCACCCACTGTTTGTATCTGGGGATGAAATAACACATGAATTAGTATTGCAAGAATTGCCATCTTTAAGAGTTTCTCAACGCCTCAAGTCTCAGAAACATCCTCTCCGTGATGTTAAGTACTCACATGATCTAAGCCCAAGCTTGCTTTGTTGTTTAAGTGAGGACACCTTGCAGTTTTTTTCTGCCAAATTTTCATGA 1833 0.4435 MDPFTVDEETEDDEETEGEAEDYIPVEGSTRVSQNGAVTSDQAISVNGGSGEVLALRVSDEGFQEGGGEMRRVEGGEISAMGSSSSSNGGETQEGSDGWVQDQIDGLCCPICMEAWTSGGEHQVCCLPCGHIYGISCIKKWFQQCGRSSGKCPQCKRKCTLRNVRTLYASRVVAVDEDLRKKIRSLEAKCASLEKKNADWCMKESDWHKREADLHLQVQQLIERTTYLERLSSEMHGRGSGLVAARGHNFAENFGRRGSSCNFVLQKELQVDGARYFDIDASGEILVIARRLSGTGGTHVLTKMSLISPHEIEDILLPSGTKAVKDLRVSPAKCRLALLASLGKKLSVLSMESNNVILTYDLPTAAWSCSWDLNSSHYMYAGLQNGMLMVFDMRQTARPMAEISGPTSNPIHTIQSVLHNSTLPSGVSTLLSASSVGLCQWNFGGSEERPFLVPETKNHGVCISLAHCPSSDNIVSTFRPKVEMSNEIAVSQYSLTPSVMGQGMQGSHVLLKRVGGNCYQKLGSSCANVNDIRLQRSAIIDLQSHHPLFVSGDEITHELVLQELPSLRVSQRLKSQKHPLRDVKYSHDLSPSLLCCLSEDTLQFFSAKFS* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1275 610 ProSiteProfiles Zinc finger RING-type profile. 109 156 IPR001841 -
Vvi8g1275 610 SUPERFAMILY RING/U-box 102 161 - -
Vvi8g1275 610 MobiDBLite consensus disorder prediction 1 22 - -
Vvi8g1275 610 MobiDBLite consensus disorder prediction 1 44 - -
Vvi8g1275 610 SMART ring_2 109 155 IPR001841 -
Vvi8g1275 610 MobiDBLite consensus disorder prediction 65 97 - -
Vvi8g1275 610 Coils Coil 602 610 - -
Vvi8g1275 610 PANTHER RFWD3 PROTEIN 7 609 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Vvi8g1275 610 CDD mRING-C3HGC3_RFWD3 105 168 - -
Vvi8g1275 610 Coils Coil 176 203 - -
Vvi8g1275 610 MobiDBLite consensus disorder prediction 28 44 - -
Vvi8g1275 610 MobiDBLite consensus disorder prediction 79 97 - -
Vvi8g1275 610 Gene3D - 303 494 IPR015943 GO:0005515
Vvi8g1275 610 SUPERFAMILY WD40 repeat-like 318 605 IPR036322 GO:0005515
Vvi8g1275 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 219 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1275 109 193 C3H Transcription Factor Family AT4G01270 30.693 2.01e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1275 K15691 - vvi:100241876 1184.09