Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1270 ATGGGCGGTAGAGAAGAGAATCGCATATTCGTGGGAGGATTGGGTTGGAACACTTCGGAGAGGCATCTTGAAGATGCCTTCAGTCGATACGGAAAAATTCTCGAGTCCCTGGTCATGATGGAAAGAGATACTGGTCGTCCTCGCGGGTTTGGATTTATAACCTTTGCAGATCATCGAGCTATGGAAGATGCAATTCGGGAGATGCATGGCCGGGAGTTGGATGGCAGGGTAATATCTGTAAACAAGGCACAGCCAAAAATGGGCAGTGAAGATTCAGGATATGGCTATGGTAGGGACCATATGCCAAGTGGCAGGGATCATGCTCCTGGTGGCAGAGACCACGCGACAAGTGGCAGAGACCGCATATCTGGTGGACGGGACCATATGCCAGGTGGCAGGGATCATTTCCCTGGTGGCAGGGATCATTTTCCAGGTGGCAGGGATCGTATGCTGGGTGGTAGGGACAGCTACAGGGGAGTTGATAAGCCAGTTGGCCGATCTGATGATTGCTTTAAGTGCGGCCGTCCAGGACATTGGGCGCGGGATTGTCCTTCTGGTGATGGTGTTGGCAGTGGTGGTGGCCGATTCTCTTCACATTCCAAGTTTGGTGGAGGTGGAGGTGGGGGTGGAGGTGGTCGTGGCGATCGCTTTGGAGGAGACCGATATGATGATCATTTTGATGGGGGACGCTATGGAGGAGATAGGGAGCGCACTGATAGCAGAGACAACAGGTATGGCCGTGATCGTTACAACAATGACAGGTACCAGCCTGGTGGTGATCGCTTTGGAGGGGATAGATATATGGACCGGGACACTCAAAATGGGTACAACGGCAAGGATAAGGGTTACAATAGGGAAGGAGGACCCAGAGGTGGTGGCGACAAGTATGGAAGTGGAGGAGGGCCAGCCCGTTTCGACAGGGGAAGCTACAGGGACAGACCCGGTCCTTATGATCGCTCTAGAAAAGCAGGTCGACCATCTTCCTATGACCGGTACTGA 999 0.5315 MGGREENRIFVGGLGWNTSERHLEDAFSRYGKILESLVMMERDTGRPRGFGFITFADHRAMEDAIREMHGRELDGRVISVNKAQPKMGSEDSGYGYGRDHMPSGRDHAPGGRDHATSGRDRISGGRDHMPGGRDHFPGGRDHFPGGRDRMLGGRDSYRGVDKPVGRSDDCFKCGRPGHWARDCPSGDGVGSGGGRFSSHSKFGGGGGGGGGGRGDRFGGDRYDDHFDGGRYGGDRERTDSRDNRYGRDRYNNDRYQPGGDRFGGDRYMDRDTQNGYNGKDKGYNREGGPRGGGDKYGSGGGPARFDRGSYRDRPGPYDRSRKAGRPSSYDRY* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1270 332 Pfam Zinc knuckle 170 185 IPR001878 GO:0003676|GO:0008270
Vvi8g1270 332 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 5 324 - -
Vvi8g1270 332 MobiDBLite consensus disorder prediction 181 332 - -
Vvi8g1270 332 MobiDBLite consensus disorder prediction 100 164 - -
Vvi8g1270 332 Gene3D - 2 160 IPR012677 -
Vvi8g1270 332 ProSiteProfiles Zinc finger CCHC-type profile. 170 185 IPR001878 GO:0003676|GO:0008270
Vvi8g1270 332 SUPERFAMILY RNA-binding domain, RBD 4 112 IPR035979 GO:0003676
Vvi8g1270 332 FunFam glycine-rich RNA-binding protein RZ1C 1 122 - -
Vvi8g1270 332 MobiDBLite consensus disorder prediction 216 276 - -
Vvi8g1270 332 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Vvi8g1270 332 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Vvi8g1270 332 Gene3D - 161 191 - -
Vvi8g1270 332 SMART c2hcfinal6 169 185 IPR001878 GO:0003676|GO:0008270
Vvi8g1270 332 MobiDBLite consensus disorder prediction 84 164 - -
Vvi8g1270 332 SMART rrm1_1 8 81 IPR000504 GO:0003723
Vvi8g1270 332 MobiDBLite consensus disorder prediction 306 332 - -
Vvi8g1270 332 SUPERFAMILY Retrovirus zinc finger-like domains 153 188 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1270 Vvi-Chr8 18819154 18822949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1270 9 86 C2H2 Transcription Factor Family AT2G19380 38.462 1.59e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1270 - - vvi:100257264 592.808