Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1266 ATGCAAGGGGAAAATTTGCGTAAAGGGTCTTGGCTTGAAGAGGAAGATGAGCGACTGACTGCCTTTGTTGGACTGTTGGGGGAACGGCGCTGGGACTCTATTGCAAGAGCATCAGGTCTAAAAAGGAGCGGTAAGAGTTGCAGGTTGCGGTGGTTGAACTATCTTCGCCCTGACCTTAAACGTTGTCAGATAAGCGCTGAAGAAGAGCAAATCATCCTTCAACTTCACAAACGATGGGGTAACAAGTGGTCGTGGATTGCAAGAAGCTTGCCAGGAAGAACCGATAATGAGATAAAGAATTACTGGAGAACTCATTTGAGGAAGAGGACAGAAATTGAAGAACAAGGTATACTGCAATTTTCTGCTTCTTGA 372 0.4543 MQGENLRKGSWLEEEDERLTAFVGLLGERRWDSIARASGLKRSGKSCRLRWLNYLRPDLKRCQISAEEEQIILQLHKRWGNKWSWIARSLPGRTDNEIKNYWRTHLRKRTEIEEQGILQFSAS* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1266 123 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Vvi8g1266 123 CDD SANT 65 106 IPR001005 -
Vvi8g1266 123 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 2 109 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vvi8g1266 123 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 110 IPR017930 -
Vvi8g1266 123 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 59 IPR017930 -
Vvi8g1266 123 Gene3D - 65 109 - -
Vvi8g1266 123 Pfam Myb-like DNA-binding domain 65 106 IPR001005 -
Vvi8g1266 123 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Vvi8g1266 123 Gene3D - 1 61 - -
Vvi8g1266 123 CDD SANT 10 55 IPR001005 -
Vvi8g1266 123 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Vvi8g1266 123 SMART sant 60 108 IPR001005 -
Vvi8g1266 123 SMART sant 7 57 IPR001005 -
Vvi8g1266 123 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
Vvi8g1266 123 FunFam Myb transcription factor 8 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1266 Vvi-Chr8 18790207 18790780 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1266 4 111 MYB Transcription Factor Family AT3G24310 69.444 1.23e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi8g1266 Myb_DNA-binding 4.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1266 K09422 - vvi:100262377 244.973