Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1265 ATGTTAGATGTAGATCATTCTCGGAGAAAACCAACCCAGACTCATCCTTCTGCATCAGCCATGCTTCGCAGGACCTGCATTGTCCTAATCTCTCTTCTAAGCTCACTTTCTGCACTTGCTACGCCAATGCAGAACCTCACCCTCCTCGGTCAACATCCAGACCCCGAAGCTGTTGTCCAAGAAGTTCAAAGAAGAGTAAATGTGTCGGTGTCAAGAAGACAAACACTAGAAGTGTCCCAAAGCGACCAGTCCTCCTCATGCGTCACGGGAAACCCCATAGACGACTGCTGGAGGTGCGACCCCAACTGGGAAGCCGACCGCCAACGCCTCGCCGACTGCGCCATTGGATTCGGCCAGTACGCCCTCGGCGGCAAAGGCGGTCAGATCTACGTCGTCACCGACTCCTCCGACCACGACGCCGTCACCCCTCGCCCCGGCACACTCCGCTACGCCGTCATCCAGTCCGACCCTCTCTGGATCGTCTTTGCCACCAACATGCTCATCAAACTCTCCCAGGAGCTCATCTTCAACAGCTACAAAACCCTAGACGGCCGTGGCGCCAACGTCCACATCGTCGGAGGCGGTTGCATCACTCTCCAGTACATCAGTAACGTCATCATCCACAACATCCACATCCACCATTGCGTGCAGTCGGGCGAGGCTAACGTGCGGTCGAGCCCCACACACTACGGGTGGCGCACACTGTCGGACGGTGATGGAATATCGATATTCGGATCACGAGACATATGGATCGACCACTGTTCGTTGTCCCATTGTAAAGACGGTTTGATCGATGCAGTGATGGGTTCCACAGGCATAACAATATCCAACAACTTTTTCTCGCATCACGATGAGGTGATGCTGTTAGGTCACAGCGATTCGTATGTGCCCGATTCAGGGATGCAGGTCACTATAGCATTTAATCACTTTGGTGAGCAGCTGGTGCAGCGGATGCCTAGGTGCAGACGCGGCTATATACACGTGGTCAACAATGATTTTACTCGTTGGGAGATGTATGCTATTGGGGGTAGCGGTAGCCCCACCATCAACAGCCAGGGGAATCGCTATACCGCGCCTTCCAATCGCAACGCCAAGGAGGTGACGAAGCGCGTGGATACGGATGAGAAGAAGTGGAGGGACTGGAATTGGAGGAGCGAGGGGGACATATTGGTGAACGGAGCCTTCTTCATTGCATCAGGTGAAACCGTTGAGGTTCTCTACGAAAAAGCCTACAGCGTGGAGCCCAAATCTGCTGCCCTCATTGATCAACTTACCACTAACGCCGGTGTCCTCGGTGGCAGCGGCAACAACCTTGGAACGTGGAGGACAGAACGAAGTGGTGGGGGATATGGTTTTGGTGATGACTACTCCGAGAATATGTTGAGCGGCTCACCATCCTCCTTTGCCCTTTCTTCCACTCTCCTTCCTCCTTTATTTCTCTTATCTTCCTTTCTACTCTTGTACCTCTAA 1470 0.534 MLDVDHSRRKPTQTHPSASAMLRRTCIVLISLLSSLSALATPMQNLTLLGQHPDPEAVVQEVQRRVNVSVSRRQTLEVSQSDQSSSCVTGNPIDDCWRCDPNWEADRQRLADCAIGFGQYALGGKGGQIYVVTDSSDHDAVTPRPGTLRYAVIQSDPLWIVFATNMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCVQSGEANVRSSPTHYGWRTLSDGDGISIFGSRDIWIDHCSLSHCKDGLIDAVMGSTGITISNNFFSHHDEVMLLGHSDSYVPDSGMQVTIAFNHFGEQLVQRMPRCRRGYIHVVNNDFTRWEMYAIGGSGSPTINSQGNRYTAPSNRNAKEVTKRVDTDEKKWRDWNWRSEGDILVNGAFFIASGETVEVLYEKAYSVEPKSAALIDQLTTNAGVLGGSGNNLGTWRTERSGGGYGFGDDYSENMLSGSPSSFALSSTLLPPLFLLSSFLLLYL* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1265 489 FunFam Pectate lyase 90 432 - -
Vvi8g1265 489 Pfam Pectate lyase 174 354 IPR002022 -
Vvi8g1265 489 PRINTS Pollen allergen Amb family signature 381 405 IPR018082 -
Vvi8g1265 489 PRINTS Pollen allergen Amb family signature 137 162 IPR018082 -
Vvi8g1265 489 PRINTS Pollen allergen Amb family signature 410 433 IPR018082 -
Vvi8g1265 489 PRINTS Pollen allergen Amb family signature 113 130 IPR018082 -
Vvi8g1265 489 PRINTS Pollen allergen Amb family signature 173 189 IPR018082 -
Vvi8g1265 489 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Vvi8g1265 489 PRINTS Pollen allergen Amb family signature 237 258 IPR018082 -
Vvi8g1265 489 PRINTS Pollen allergen Amb family signature 339 358 IPR018082 -
Vvi8g1265 489 SUPERFAMILY Pectin lyase-like 85 431 IPR011050 -
Vvi8g1265 489 Gene3D - 90 432 IPR012334 -
Vvi8g1265 489 SMART amb_all 165 362 IPR002022 -
Vvi8g1265 489 PANTHER PECTATE LYASE 18-RELATED 50 432 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1265 Vvi-Chr8 18784751 18787154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1265 21 487 Polysaccharide Lyase AT3G53190 72.727 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1265 K01728 - vvi:100267540 904.049