Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1262 ATGGAGAGCGGTTTGGAGGGCCAGATGTCGACTCATAGGCATGAGGAAGATGAGTCTTTAATGGAGATGGGATCTGGGCGTTTTGGGTGTTCGCATTACAGAAGGAGATGCAAGATCAGAGCTCCTTGTTGCGATGAGATATTCGATTGCAGGCATTGCCATAACGAAGCAAAGAATGCATTAGAAGTTGATCCTCTCACTCGGCACGACGTTCCTCGCCATGAAATAAAAAGGGTTATCTGCTCTTTGTGTGGCACAGAACAAGATGTTCAGCAGAATTGCATCCACTGTGGGGTATGCATGGGACAGTACTTCTGTTCAAAATGCAAGTTCTTCGACGATGATGTTTCAAAGCAAATATACCATTGCAACAAGTGTGGAATCTGCAGAACTGGAGGAGAGGAGAACTTTTTCCACTGTGATAAGTGTGGATGTTGCTATTCAACAGCTTTGAAGGATTCACACAATTGTGTGGAAAGAGCAATGCACCACAATTGCCCTGTTTGCTTCGAGTATCTTTTTGATACTACCACAGACATTACTGTCTTGCATTGCGGACATACCATACATTTGGAATGTTTGAAAGAGATGGAACGTCATTTCCAGTACTCATGCCCTGTCTGCTCAAAGTCATATTGTGATATGTCCCATGTTTGGGAAAAGCTCGATCAAGAGGTTGCTTTGACTCCCATGCCATCTATGTTCGAAAATAAGATGGTTTGGATACTCTGCAATGACTGTGGGGAAACATCAGAGGTAAATTTCCATATTGTGGCTCATAAGTGCCTAAAATGCAACTCCTACAATACAAGGCAGACACGAGGAGGCCCTGCTTCATGCTCATCGAGGATTGAGGAGATGATGAGATAA 870 0.4379 MESGLEGQMSTHRHEEDESLMEMGSGRFGCSHYRRRCKIRAPCCDEIFDCRHCHNEAKNALEVDPLTRHDVPRHEIKRVICSLCGTEQDVQQNCIHCGVCMGQYFCSKCKFFDDDVSKQIYHCNKCGICRTGGEENFFHCDKCGCCYSTALKDSHNCVERAMHHNCPVCFEYLFDTTTDITVLHCGHTIHLECLKEMERHFQYSCPVCSKSYCDMSHVWEKLDQEVALTPMPSMFENKMVWILCNDCGETSEVNFHIVAHKCLKCNSYNTRQTRGGPASCSSRIEEMMR* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1262 289 Pfam CHY zinc finger 30 111 IPR008913 GO:0008270
Vvi8g1262 289 SUPERFAMILY CHY zinc finger-like 26 101 IPR037274 GO:0008270
Vvi8g1262 289 Gene3D - 237 280 - -
Vvi8g1262 289 ProSiteProfiles Zinc finger CHY-type profile. 23 99 IPR008913 GO:0008270
Vvi8g1262 289 MobiDBLite consensus disorder prediction 1 20 - -
Vvi8g1262 289 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 11 274 - -
Vvi8g1262 289 SMART ring_2 166 208 IPR001841 -
Vvi8g1262 289 ProSiteProfiles Zinc finger RING-type profile. 166 209 IPR001841 -
Vvi8g1262 289 Pfam RING-type zinc-finger 166 206 IPR027370 -
Vvi8g1262 289 Pfam Zinc-ribbon 213 271 IPR039512 -
Vvi8g1262 289 SUPERFAMILY Zinc hairpin stack 102 159 IPR037275 -
Vvi8g1262 289 ProSiteProfiles Zinc finger CTCHY-type profile. 101 165 IPR017921 -
Vvi8g1262 289 SUPERFAMILY RING/U-box 164 214 - -
Vvi8g1262 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 229 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1262 Vvi-Chr8 18768420 18771050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1262 28 282 C2H2 Transcription Factor Family AT3G18290 37.643 5.36e-50 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1262 K10144 - vvi:100241783 647.121