Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1260 ATGGAAGTTCAAGAGGAAGTGATGGGGTCTAATGATCAGACGCATGTCATCAAGGGCAAGCGCACCAAGCGTCAAAGGCTGTCGTCCCCACTTGCCTTAACTATGGCATCCAGTTCATCTAGCGGAGAAGAAGGTGATGGTGGTGGAAGAGTCAGTGATAATTCTGGTGGGGTTGATCGAGCGACTACCTCACCTACCACCTCCACTGATCATGAATTCGCCGAAAGCACGGAAGAGGAGGAAGACATGGCCAATTGTTTGATTCTGTTGGCTCAAGGCCAAAGCCGGAAAGTGGCCGTGCCAGCTGCCGCTGCAACTAGTAGCAAGGCCACAGGCTTCTACGTTTATCAGTGCAAGACGTGTTACAGATGCTTCCCTTCATTCCAAGCTCTGGGAGGGCACAGAGCCAGTCATAAGAGACCTAAGGCGGTCACAGAAGAGAAGCGGACTTGGGCTTTAATGGAGGATGAATATGATCAATTCAACCACAACAGCACTGCCCTTTCTCTGCAAATACCAAATAGGGGTTTATACAGTAATAACAAATCCAAGGTTCACGAGTGCTCCATTTGCGGTGCTGAATTCTCATCCGGTCAAGCCTTGGGAGGTCATATGAGGCGGCACAGAACGTTTACAGGCCCGCCCCCTACCATGCCTATGGCAACCAGCAGTCCTGAGTCCCAAGAAGCCAAGAAACCCAGAAACATACTGCAATTGGATCTTAATCTTCCAGCCCCAGAAGACGATCACCGCGAGTCCAAATTCCCCTTTGCTACAAAAGAACAAGCTCTCGTGTTCTCCGCCTCTCCTTTGGTTGATTGCCATTACTAA 831 0.5006 MEVQEEVMGSNDQTHVIKGKRTKRQRLSSPLALTMASSSSSGEEGDGGGRVSDNSGGVDRATTSPTTSTDHEFAESTEEEEDMANCLILLAQGQSRKVAVPAAAATSSKATGFYVYQCKTCYRCFPSFQALGGHRASHKRPKAVTEEKRTWALMEDEYDQFNHNSTALSLQIPNRGLYSNNKSKVHECSICGAEFSSGQALGGHMRRHRTFTGPPPTMPMATSSPESQEAKKPRNILQLDLNLPAPEDDHRESKFPFATKEQALVFSASPLVDCHY* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1260 276 ProSiteProfiles Zinc finger C2H2 type domain profile. 186 216 IPR013087 -
Vvi8g1260 276 MobiDBLite consensus disorder prediction 214 233 - -
Vvi8g1260 276 SUPERFAMILY beta-beta-alpha zinc fingers 115 208 IPR036236 -
Vvi8g1260 276 MobiDBLite consensus disorder prediction 56 71 - -
Vvi8g1260 276 MobiDBLite consensus disorder prediction 1 78 - -
Vvi8g1260 276 SMART c2h2final6 186 208 IPR013087 -
Vvi8g1260 276 SMART c2h2final6 116 138 IPR013087 -
Vvi8g1260 276 Pfam C2H2-type zinc finger 115 141 - -
Vvi8g1260 276 Pfam C2H2-type zinc finger 185 209 - -
Vvi8g1260 276 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
Vvi8g1260 276 Gene3D Classic Zinc Finger 114 208 - -
Vvi8g1260 276 ProSitePatterns Zinc finger C2H2 type domain signature. 188 208 IPR013087 -
Vvi8g1260 276 MobiDBLite consensus disorder prediction 27 45 - -
Vvi8g1260 276 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 143 IPR013087 -
Vvi8g1260 276 PANTHER ZINC FINGER PROTEIN ZAT5 37 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1260 Vvi-Chr8 18752543 18753373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1260 1 276 C2H2 Transcription Factor Family AT2G28200 47.249 1.76e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi8g1260 zf-C2H2_6 1.7e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1260 - - vvi:100252049 514.227