Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1259 ATGGCAGTTCCAGGGCGGCGCAATGGTCTGATGGAGGAAGACGACGACAACGATGAAGCTGTATTCGGGGAGTTAATCGAGGACGAAGTCGAAGCACCTGCCCACCTCCGCAACCTCGCCGCAGCCGCCCAGCTCGGCGATGTGGACGCCCTTCGCCTCGCGCTAGATACATTGAACGGCAGCATTGATGAACCAGTGGAAGATGGGGATACTGCTCTCCATCTGACCTGTTTGTATGGTTTTCTGCCTTGTGTCCAGCTACTATTGGAAAGAGGAGCTTCATTAGAGGCCAAGGATGAAGATGGGGCTATTCCTCTACATGATGCTTGTGCAGGGGGTTTCACCGAGATAGTTGAACTTCTAATGAACAGTACAAATAACACTGAATGCGTGAAGAGAATGCTGGAATCAGTTGATGTAGAAGCCTCTCCATCATGCCGCCAGGGGTGA 450 0.5222 MAVPGRRNGLMEEDDDNDEAVFGELIEDEVEAPAHLRNLAAAAQLGDVDALRLALDTLNGSIDEPVEDGDTALHLTCLYGFLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFTEIVELLMNSTNNTECVKRMLESVDVEASPSCRQG* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1259 149 ProSiteProfiles Ankyrin repeat profile. 101 133 IPR002110 GO:0005515
Vvi8g1259 149 FunFam BRCA1-associated RING domain protein 1 33 146 - -
Vvi8g1259 149 SMART ANK_2a 101 130 IPR002110 GO:0005515
Vvi8g1259 149 SMART ANK_2a 68 97 IPR002110 GO:0005515
Vvi8g1259 149 SUPERFAMILY Ankyrin repeat 36 136 IPR036770 -
Vvi8g1259 149 ProSiteProfiles Ankyrin repeat profile. 68 100 IPR002110 GO:0005515
Vvi8g1259 149 Gene3D - 15 147 IPR036770 -
Vvi8g1259 149 ProSiteProfiles Ankyrin repeat region circular profile. 68 100 - -
Vvi8g1259 149 PANTHER SOWAH (DROSOPHILA) HOMOLOG 32 136 - -
Vvi8g1259 149 Pfam Ankyrin repeats (3 copies) 40 124 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1259 8 121 Ion Channels AT2G25600 34.454 3.35e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1259 - - vvi:100262282 276.559