Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1254 ATGGACAGAGACTGGGGCTCGAAGCCAGGGACCGGTGGCGCCGCCTCCGCCCAGAATGAAGCCATCGACCGGAGGGAGCGTCTCAGAAGGCTTGCTCTCGAGACTATTGATCTCGCCAAAGATCCCTATTTCATGCGTAATCATCTCGGAAGCTATGAGTGTAAGCTTTGCCTGACATTGCACAACAACGAGGGCAATTATTTGGCCCACACACAAGGGAAGAGGCATCAGACGAATTTGGCCAAGAGAGCTGCTCGTGAGGCCAAAGAGGCGCCTGCGCAGCCACAGCCCCACAAGCGCAAAGTCTCCGTACGCAAGACAGTTAAAATTGGTAGGCCCGGGTATCGGGTAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAGAGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAGGTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACGTTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCAAACAAGCCTCAGCCTGCCTCTGCAGCTAATGGTACAACTGCTCCTGGTGCCCCACCAAGGCCTTTGCCCCCACCACCTCAAGCTCCTCCTCCACCTCCTCCTCCACCACAGGGACTCCCACCAGGTGCAACAATTGCTAATCCTCCAAGAGGACCACCGCCTCCTATGCCTGGAACCTTGCCACCACCTCCACCTCCAATGGGAAATGGGCCTAGGCCTATGCCCCCAGGTGGAGCTCTACCCGTTCCTCCGCCTCCTGTTGGCAGTGGCACAATGGCGAATTTCACTCCAGGGACTCAGATGGCTAGGCCTCCCTCAATGATGCCTCCACAAGGTTTTCCAGGACAGCAGATGCAGGGTCAGGGAATTCGCCCACCTATGCAGCCTCCTAACATGGGGCAACAGGTTCCCAGACCCCAATGA 1074 0.5307 MDRDWGSKPGTGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLAKPRHRFMSSFEQRVQSFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTKPPEANKPQPASAANGTTAPGAPPRPLPPPPQAPPPPPPPPQGLPPGATIANPPRGPPPPMPGTLPPPPPPMGNGPRPMPPGGALPVPPPPVGSGTMANFTPGTQMARPPSMMPPQGFPGQQMQGQGIRPPMQPPNMGQQVPRPQ* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1254 357 Pfam Zinc-finger of C2H2 type 52 76 - -
Vvi8g1254 357 Gene3D - 93 218 - -
Vvi8g1254 357 SUPERFAMILY beta-beta-alpha zinc fingers 48 83 IPR036236 -
Vvi8g1254 357 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Vvi8g1254 357 MobiDBLite consensus disorder prediction 213 357 - -
Vvi8g1254 357 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Vvi8g1254 357 MobiDBLite consensus disorder prediction 1 21 - -
Vvi8g1254 357 FunFam Splicing factor 3a subunit 2 94 218 - -
Vvi8g1254 357 Gene3D Classic Zinc Finger 46 89 - -
Vvi8g1254 357 MobiDBLite consensus disorder prediction 233 307 - -
Vvi8g1254 357 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Vvi8g1254 357 SMART CactinC_cactus_3 89 217 - -
Vvi8g1254 357 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 349 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1254 1 228 C2H2 Transcription Factor Family AT2G32600 87.719 9.04e-141 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1254 K12826 - vvi:100245136 536.569