Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1251 ATGGCATTGCCTTTGCGAGCCCTCTTGTCATCATTGCTGCCGCTGCTTTTGCTCCTGCTGTCTCATGATGTCCATGCCAATGGATGGACAGGGAATGCACGTCATGCATTGCTTTCCAAGCACCATAGACCAAAGTTCAAGCCTGGCCCTTGGCATAATGCTCATGCCACCTTTTATGGAGGAGCCGATGCCTCACAAACAATGGGGGGAGCTTGTGGCTATGGAGACCTGCATAAGCAAGGGTATGGGGTTCAAACCGCAGCGTTGAGCACGGTTCTCTTCAATGGTGGGCAGGCATGTGGGGCTTGTTTCGAAATCAAATGTGTGGATGATCCACAGGGGTGCAAGCGAGGGCAGGCATCACTCATGGTTACAGCCACCAACCTGTGCCCTCCAAGTAGCAATGGAGGATGGTGTAATCCACCTCGTGAACACTTTGATCTCTCCCAGCCTGCATTTCTTCAGATTGCCGAGTACAAGGCTGGCATTGTTCCCGTTCAGTATCGCAGGGTCCCATGCAAGAAGAAAGGAGGGATTCGATTCACAATATCTGGGAATCCTTACTTCAACCTTGTGTTTATATGGAATGTTGGAGGAGCTGGAGATATCACGAGTGTGCAGGTGAAGGGCGATCGCAAACTGAAATGGACAACACTCAAGCGTAATTGGGGTCAGAACTGGGAGACTGACGCCATGTTGGTTGGGGAATCACTCACCTTCCGAGTCAGAGTAAGTGATGGTAGATACTCTACCTCCTGGCATATCGCCCCAAAGAACTGGCAGTTCGGCCAGACCTTTGAAGGCAAGAACTTCAAGTAG 819 0.5092 MALPLRALLSSLLPLLLLLLSHDVHANGWTGNARHALLSKHHRPKFKPGPWHNAHATFYGGADASQTMGGACGYGDLHKQGYGVQTAALSTVLFNGGQACGACFEIKCVDDPQGCKRGQASLMVTATNLCPPSSNGGWCNPPREHFDLSQPAFLQIAEYKAGIVPVQYRRVPCKKKGGIRFTISGNPYFNLVFIWNVGGAGDITSVQVKGDRKLKWTTLKRNWGQNWETDAMLVGESLTFRVRVSDGRYSTSWHIAPKNWQFGQTFEGKNFK* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1251 272 Pfam Lytic transglycolase 86 168 IPR009009 -
Vvi8g1251 272 SUPERFAMILY PHL pollen allergen 175 268 IPR036749 -
Vvi8g1251 272 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 69 178 IPR007112 -
Vvi8g1251 272 Gene3D - 36 174 IPR036908 -
Vvi8g1251 272 PRINTS Expansin signature 153 166 IPR002963 GO:0009664
Vvi8g1251 272 PRINTS Expansin signature 81 95 IPR002963 GO:0009664
Vvi8g1251 272 PRINTS Expansin signature 189 210 IPR002963 GO:0009664
Vvi8g1251 272 PRINTS Expansin signature 177 189 IPR002963 GO:0009664
Vvi8g1251 272 PRINTS Expansin signature 254 270 IPR002963 GO:0009664
Vvi8g1251 272 PRINTS Expansin signature 122 132 IPR002963 GO:0009664
Vvi8g1251 272 PRINTS Expansin signature 225 246 IPR002963 GO:0009664
Vvi8g1251 272 PRINTS Expansin signature 108 119 IPR002963 GO:0009664
Vvi8g1251 272 PRINTS Expansin signature 136 153 IPR002963 GO:0009664
Vvi8g1251 272 Gene3D - 175 271 IPR036749 -
Vvi8g1251 272 CDD DPBB_EXPA_N 50 173 - -
Vvi8g1251 272 SMART dpbb_1 86 168 IPR007112 -
Vvi8g1251 272 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 188 268 IPR007117 -
Vvi8g1251 272 PRINTS Expansin/Lol pI family signature 254 268 IPR007118 GO:0005576
Vvi8g1251 272 PRINTS Expansin/Lol pI family signature 161 177 IPR007118 GO:0005576
Vvi8g1251 272 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Vvi8g1251 272 PRINTS Expansin/Lol pI family signature 90 108 IPR007118 GO:0005576
Vvi8g1251 272 PRINTS Expansin/Lol pI family signature 216 230 IPR007118 GO:0005576
Vvi8g1251 272 PRINTS Expansin/Lol pI family signature 50 65 IPR007118 GO:0005576
Vvi8g1251 272 Pfam Expansin C-terminal domain 179 257 IPR007117 -
Vvi8g1251 272 SUPERFAMILY Barwin-like endoglucanases 50 196 IPR036908 -
Vvi8g1251 272 PANTHER EXPANSIN-A15 42 271 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1251 Vvi-Chr8 18624417 18625435 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1251 46 272 Expansin Gene Family AT2G39700 66.810 7.20e-118 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1251 - - vvi:100255435 555.058