Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1241 ATGCCGGTTCCACCGTGGCTGGAACCATTGCTCACCACACCCTTCTTCTCCATCTGCCGCACCCATGGAGATGCGGCCAGGAGCGAATGCAACATGTATTGCTTGGATTGCAGTGGCGACTCCTTTTGCTTTTATTGCCGCTCATCTAGACACAAGGATCATCAAGTCATTCAGATAAGGCGATCTTCGTACCATGATGTAGTGAGAGTAGCAGAAATTCAGAAGGTATTGGACATAAGTGGAGTTCAGACGTATGTGATAAACAGTGCGAGAGTTCTGTTTCTGAATGAGAGGCCTCAGCCAAAGACTGGGAAAGGAGTTTCTCATATATGTGAAACCTGTGGAAGAAGCCTCTTGGACCCATTCCGTTTCTGTTCATTGGGATGTAAGCTTGTAGGAATAAAGAGAAATGGGGATGCAAGCTTTAGCTTAGAGGCGAAGAATGAGATGGCCATGGAAAGAGGAGAAGGGATATCAAGGAGAGAATCGTCAAGGGATGAAGATGAATTGCGTGAAGGCTTACAACAAGACATTTACCCGCCCACGCCTCCTCCACCTCCTTCAAGTGCAAGGAGAAGAAAAGGCATTCCCCATAGGGCACCCTTTGCCTCCTAA 615 0.4764 MPVPPWLEPLLTTPFFSICRTHGDAARSECNMYCLDCSGDSFCFYCRSSRHKDHQVIQIRRSSYHDVVRVAEIQKVLDISGVQTYVINSARVLFLNERPQPKTGKGVSHICETCGRSLLDPFRFCSLGCKLVGIKRNGDASFSLEAKNEMAMERGEGISRRESSRDEDELREGLQQDIYPPTPPPPPSSARRRKGIPHRAPFAS* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1241 204 MobiDBLite consensus disorder prediction 153 204 - -
Vvi8g1241 204 Pfam PLATZ transcription factor 60 131 IPR006734 -
Vvi8g1241 204 SUPERFAMILY B-box zinc-binding domain 17 61 - -
Vvi8g1241 204 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 3 202 - -
Vvi8g1241 204 MobiDBLite consensus disorder prediction 153 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1241 Vvi-Chr8 18473234 18474431 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vvi8g1241 PLATZ 4.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1241 - - zju:107432022 358.221