Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1240 ATGGAGAACATAGGGACACCTCCCCCACCCCATGCATCTATCTTCACTCCCTTACTCATTTCCATGGTTGGTATATTGGGTACATCTCTAGTAATAGTAGTATACCATCTCGTAATCGTGAAATATTGCCTGAGGCGCCAAGCAGATCCTAGGCCATTGTTATCAGCCCCACGTTCCCGATTGTCTACCGGAGTGGATGCAAAGATCCTAGAAACAATCCCGATTCTTTCTTACTCAAAGAAAAAAGGCTTGCTGTTCCATGCGGATCAAAGTGAATGCGCTGTATGCTTAGCAGAGTTGGAGGATGATGACATGGTCCGCTTGTTGCCTAGTTGCCACCACGCTTTTCATATCACTTGCATTGATGAGTGGTTCGTTGGACATACCAACTGCCCACTGTGCCGCTCACCAGTGACCGCGGTTCTATCCTTGTCTAATGCTATTGAAGAAGGAAATGGGTTTAATCGGCCTACAGCTCAATTTCAACATCAAAGAAGTAATGGTTCTGATCTGGGTCTGCAGCTTCGCCATTGTGAATCATGTGTATTGCATATGGATGGGAAGCCGAGGCCTGTGATGGCGGGTTTGAAGAGATCTTTGTCCATGGGTCAATCCTATGTTATTATTGACATACAAAGAGAAAGTGAAAGAGCTTCATCTTCTTCGTCAAAAGCGATACTTGGGCGGAGTAGATCGTATAAGGCGAGGTCTATGAGACAACTGGATCGAGCGTCCTCAACGCTGAGAAGGTCCTACTCCCGACTGCGCATGGGTTTGAGTGGCAGGGCTAATCAAATTCTTCCATACTGA 810 0.4654 MENIGTPPPPHASIFTPLLISMVGILGTSLVIVVYHLVIVKYCLRRQADPRPLLSAPRSRLSTGVDAKILETIPILSYSKKKGLLFHADQSECAVCLAELEDDDMVRLLPSCHHAFHITCIDEWFVGHTNCPLCRSPVTAVLSLSNAIEEGNGFNRPTAQFQHQRSNGSDLGLQLRHCESCVLHMDGKPRPVMAGLKRSLSMGQSYVIIDIQRESERASSSSSKAILGRSRSYKARSMRQLDRASSTLRRSYSRLRMGLSGRANQILPY* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1240 269 CDD RING-H2_EL5-like 92 135 - -
Vvi8g1240 269 SUPERFAMILY RING/U-box 87 142 - -
Vvi8g1240 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 142 IPR013083 -
Vvi8g1240 269 SMART FANCL_C_2 89 143 - -
Vvi8g1240 269 SMART ring_2 93 134 IPR001841 -
Vvi8g1240 269 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
Vvi8g1240 269 FunFam E3 ubiquitin-protein ligase ATL6 54 141 - -
Vvi8g1240 269 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 8 241 - -
Vvi8g1240 269 Pfam Ring finger domain 92 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1240 Vvi-Chr8 18469208 18470017 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1240 15 145 C3H Transcription Factor Family AT1G04360 35.616 1.27e-29 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1240 - - vvi:104880142 519.62