Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1237 ATGCCTAGTTTGATGTCTCTCTCTTCTTTCGCACTCCTCACACCCCCTACCTTCAACTTCAAACCCACCACACTCCCTCCTAATCCCTCACTTCCCTATCTCTCCATAACATGTTCCTCAGACAACAACCCTAAACCAACCAGAAGCAGCTCCTGGGTGAGCCCTGACTGGCTGACCTCTCTGAGCCGGTCTCTCACCATGGGCCAAGACGACTCCGGTATACCCATGGCCACTGCTAAACTGGATGACGTGTCTGAGCTCCTGGGTGGTGCCCTCTTCCTTCCTTTGTTCAGATGGATGAATATGTACGGACCCATTTACCGGCTCGCCGCCGGGCCCCGCAATTTTGTGGTTGTCAGTGACCCCGCTATTGCTAAGCATGTTCTGAGGAATTATGGCAAATACGCCAAGGGTCTCGTGGCCGAGGTTTCGGAGTTTTTGTTCGGATCGGGTTTTGCCATTGCGGAAGGCGAGCTTTGGACGGTGAGGCGCAGGGCTGTGGTTCCTTCTCTTCACAAGCGATACTTATCCATAATTGTTGATCGGGTGTTTTGCAAATGTGCTGAGAGATTGGTAGAGAATCTTAGAACTGATGCACTCAATGGCAGTGCTGTAAACATGGAGGAGAAGTTTTCTCAATTGACTCTGGATGTCATCGGTCTATCTGTGTTCAACTACAATTTTGATTCACTTACTGCTGATAGTCCTGTTATTGATGCAGTTTACACTGCATTGAAAGAGGCTGAGGCTCGATCAACTGACCTTTTACCATACTGGAAGGTCAAAGCTTTGTGTAAGATAATCCCTAGACAAATAAAAGCTGAAGAATCAGTAACAGTGATAAGGAAAACTGTAGAAGAACTTATTGCTAAGTGCAAAGAAATTGTGGAAAGAGAGGGTGAGAGGATTGATGAGGATGAATATGTTAATGACTCAGATCCAAGCATCCTTCGTTTCTTGCTTGCTAGCAGAGAAGAGGTTTCAAGTGTGCAATTACGAGATGACCTTTTATCAATGTTGGTTGCTGGGCATGAGACCACTGGTTCAGTGTTGACTTGGACATTATATCTTTTAAGTAAGAACTCTTCTTCTCTGATGAAAGCACAAGAAGAGGTCGACAGGGTTTTACAGGGAAGGTCTCCCTCGTATGAAGATATAAAGGATCTCAAGTTCTTAACACGTTGCATAAATGAGTCCATGCGTCTATACCCTCATCCTCCTGTTTTGATAAGAAGAGCTAAAGTCGCTGATGTGCTTCCTGGAAATTACAAGGTCAATGCTGGTCAAGATATAATGATTTCAGTATATAATATCCATCACTCCTCTCAGGTCTGGGAAAGAGCAGAAGATTTTCTGCCGGAAAGATTCGACTTAGAAGGTCCTGTGCCTAATGAAACAAATACAGATTTCAGATTCATTCCATTTAGTGGGGGCCCACGTAAGTGTGTTGGTGATCAGTTTGCTTTGCTGGAAGCGATTGTTGCACTTGCAATCTTTGTGCAGCACATGAATTTTGAGCTGGTTCCTGATCAGAATATTAGCATGACTACCGGGGCAACTATTCATACAACAAATGGCTTGTACATGAAATTGACTCAAAGGCAAATTCCATCTGCATTTGTTCCAACATCTTCTAGGTAA 1641 0.4461 MPSLMSLSSFALLTPPTFNFKPTTLPPNPSLPYLSITCSSDNNPKPTRSSSWVSPDWLTSLSRSLTMGQDDSGIPMATAKLDDVSELLGGALFLPLFRWMNMYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGKYAKGLVAEVSEFLFGSGFAIAEGELWTVRRRAVVPSLHKRYLSIIVDRVFCKCAERLVENLRTDALNGSAVNMEEKFSQLTLDVIGLSVFNYNFDSLTADSPVIDAVYTALKEAEARSTDLLPYWKVKALCKIIPRQIKAEESVTVIRKTVEELIAKCKEIVEREGERIDEDEYVNDSDPSILRFLLASREEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKNSSSLMKAQEEVDRVLQGRSPSYEDIKDLKFLTRCINESMRLYPHPPVLIRRAKVADVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEDFLPERFDLEGPVPNETNTDFRFIPFSGGPRKCVGDQFALLEAIVALAIFVQHMNFELVPDQNISMTTGATIHTTNGLYMKLTQRQIPSAFVPTSSR* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1237 546 PANTHER CYTOCHROME P450 FAMILY 4 96 535 - -
Vvi8g1237 546 Pfam Cytochrome P450 97 518 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1237 546 CDD CYP97 94 528 - -
Vvi8g1237 546 SUPERFAMILY Cytochrome P450 89 534 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1237 546 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 475 484 IPR017972 GO:0005506|GO:0016705
Vvi8g1237 546 PRINTS P450 superfamily signature 394 405 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1237 546 PRINTS P450 superfamily signature 342 359 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1237 546 PRINTS P450 superfamily signature 473 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1237 546 PRINTS P450 superfamily signature 482 493 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1237 546 PRINTS E-class P450 group I signature 434 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1237 546 PRINTS E-class P450 group I signature 472 482 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1237 546 PRINTS E-class P450 group I signature 482 505 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1237 546 PRINTS E-class P450 group I signature 100 119 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1237 546 PRINTS E-class P450 group I signature 351 377 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1237 546 PRINTS E-class P450 group I signature 331 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1237 546 PRINTS E-class P450 group I signature 393 411 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi8g1237 546 Gene3D Cytochrome P450 75 543 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1237 Vvi-Chr8 18452646 18457877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1237 21 534 Cytochrome P450 AT3G53130 80.651 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1237 K09837 - vvi:100243621 1085.09