Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1236 ATGGAAGACGAAACCTTGGAGAGCCGAAATCAAGCCAGATTGGCTATATTGGAGCTCACCAACATGATCAGTGTCCCTATGTGCCTCCACGCTATCGTACGCCTCAACGTCCCTGATGCCATCTGGCAAGGTGGCTCCAACGCTCCCCTCTCCGCCTCCCAGATCCTAACACGTGTCCTCCCCTCTGGTGATCCCCACAATCTCCAACGCATCCTCCGCCTTCTCACCACTTACGGCGTTTTCGCCGAGCACCTCCTAACCGACCCCTCCTCCGACCAAGTCCTTCGGAAATACTCCCTCACCGACATCGGAAAAACGCTGGTCACCGATGCGGACGGCCTCTCCTACGGAGCGTATGTGCTGCAGCACTACCAGGAGGAGTTGATGACAGCGTGGCCATTGGTTCACGAGGCCGTTGTGGACTCCACCACCGAGCCCTTCGTCAAAGCCAACGGCGAGCCGGCCTATTCTTACTATGGTAAGAAACCAGAGATGAACGATCTGATGCAGAGGGCAATGTCGGGGGTATCCGTGCCCTTCATGAAGGCTATTTTGAACGGGTACAATGGGTTTGATGGAGTGCAACGATTGGTGGACGTTGGTGGGAGTGCAGGGGATTGTCTGAGGATGATCTTACAGAAACACACAAATATTAAGGAGGGGATAAACTTTGACTTGCCGGAGGTCGTAGCCAAGGCCCCAAACATTCCCGGTGTGACCCACGTTGGAGGTGACATGTTCAAATCTGTTCCTGATGGCGATGCTATCTTTATGAAGTGGGTGTTGACAACTTGGACTGATGAAGAATGCAAGCTGATCATGAAGAACTGCTACAATGCACTACCGGTGGGTGGAAAGATGATAGCCTGCGAGCCAGTGCTGCCAAAGGAGTCAGACAATAGTCTTAGAACACGAGCCCTCTTGGAAGGAGACATCTTTGTCATGACAATCTACAGAGCCAAGGGTAAGCATAGGACTGAAGAAGAATTTAGGCAACTGGGTCTCTCTGCAGGTTTCCCCCATTTACGAGCATTCTATATCGACCATTTCTATACTGTCTTAGAGTTCCAAAAGTGA 1077 0.5181 MEDETLESRNQARLAILELTNMISVPMCLHAIVRLNVPDAIWQGGSNAPLSASQILTRVLPSGDPHNLQRILRLLTTYGVFAEHLLTDPSSDQVLRKYSLTDIGKTLVTDADGLSYGAYVLQHYQEELMTAWPLVHEAVVDSTTEPFVKANGEPAYSYYGKKPEMNDLMQRAMSGVSVPFMKAILNGYNGFDGVQRLVDVGGSAGDCLRMILQKHTNIKEGINFDLPEVVAKAPNIPGVTHVGGDMFKSVPDGDAIFMKWVLTTWTDEECKLIMKNCYNALPVGGKMIACEPVLPKESDNSLRTRALLEGDIFVMTIYRAKGKHRTEEEFRQLGLSAGFPHLRAFYIDHFYTVLEFQK* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1236 358 FunFam Caffeic acid 3-O-methyltransferase 113 358 - -
Vvi8g1236 358 PIRSF O-mtase 1 358 IPR016461 GO:0008168
Vvi8g1236 358 Gene3D - 2 111 IPR036388 -
Vvi8g1236 358 Pfam O-methyltransferase domain 135 339 IPR001077 GO:0008171
Vvi8g1236 358 Gene3D Vaccinia Virus protein VP39 112 358 IPR029063 -
Vvi8g1236 358 Pfam Dimerisation domain 27 76 IPR012967 GO:0046983
Vvi8g1236 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 17 358 IPR016461 GO:0008168
Vvi8g1236 358 FunFam Caffeic acid 3-O-methyltransferase 1 112 - -
Vvi8g1236 358 PANTHER O-METHYLTRANSFERASE 19 345 IPR016461 GO:0008168
Vvi8g1236 358 SUPERFAMILY "Winged helix" DNA-binding domain 9 110 IPR036390 -
Vvi8g1236 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 356 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1236 Vvi-Chr8 18446822 18449430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1236 1 358 Monolignol Biosynthesis Gene Families AT3G53140 76.648 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1236 - - vvi:100259003 727.243