Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1233 ATGAAGTTAGTTAAAAGACGTTATAAATACCGTTTTAATTTCTTGTTGTTGAAACCAATTCCAGTTACAAAGTCCTCTGGAAGTGCATTGTACAACTCCTCAGAAAATAAGAGTCTGGGGAAGATAACAAAAAAAGATCAGAGGTTGCACAGATTAGTTTTTGAGGAAGGCGGGTTACCTGATGGAACTGAAGTTGCCTACTATGCAGGCGGAAAGAAATTGCTGGATGGTTATAAAAAAGGCTTTGGAATATTTTGTTGGTGCTGCCACTGTGAGGTCAGTGCCTCACAGTTTGAAGCTCATGCAGGTTGGGCCTCACGTAAAAAACCCTATTCATACATTTACACATCAAATGGAGTGTCACTACATGAATTGGCAATTTCTCTATCAAAAGGCCGTAAATATTCTGCTAGGGATAATGACGACCTCTGCAGTATTTGTGGAGATGGTGGCAATCTTTTGCTTTGTGATGGATGCCCTAGGGCCTTTCACAGAGTATGTGCATCTCTACCAAGCATTCCCCAAGATGACTGGTACTGTCGATATTGCCAGAACATGTTCCAACGAGAAAAGTTTGTGGAGCATAACGCCAATGCTGTAGCAGCTGGCAGGGTTTCAGGAGTGGATCCCATAGAACAAATAACCAAGCGATGCATTCGTATTGTTAACCCAGAAGCTGAAGTTAGTGCATGCGTGTTATGCAGAGGTTATGACTTCAGTAAGTCAGGATTTGGTCCACGCACGATTATACTGTGTGACCAGGAATTACCCAGTGGGAAATGGTTTTGTTGCTTGGAATGCATAAGGATCCATTCCGCTTTGCAGAAGCTGCATGTTCGTGGAGAGGAGAAGCTTCCAGACTCTCTGCTGAATGTTATAAAGGAGAAGCATGAGAGGAAAGGTTTAGAAAGCATTGCTGATTATAATGTAAGATGGAGGCTCCTTAGTGGCAAACTTGCTTCTCCTGAAACTAGGGTGTTGCTCTCTGAGGCCGTTGCTATCTTCCATGTAAGTACCGTTCTTGATGTATCTAGATAA 1038 0.4268 MKLVKRRYKYRFNFLLLKPIPVTKSSGSALYNSSENKSLGKITKKDQRLHRLVFEEGGLPDGTEVAYYAGGKKLLDGYKKGFGIFCWCCHCEVSASQFEAHAGWASRKKPYSYIYTSNGVSLHELAISLSKGRKYSARDNDDLCSICGDGGNLLLCDGCPRAFHRVCASLPSIPQDDWYCRYCQNMFQREKFVEHNANAVAAGRVSGVDPIEQITKRCIRIVNPEAEVSACVLCRGYDFSKSGFGPRTIILCDQELPSGKWFCCLECIRIHSALQKLHVRGEEKLPDSLLNVIKEKHERKGLESIADYNVRWRLLSGKLASPETRVLLSEAVAIFHVSTVLDVSR* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1233 345 ProSitePatterns Zinc finger PHD-type signature. 144 183 IPR019786 -
Vvi8g1233 345 SMART PHD_3 143 184 IPR001965 -
Vvi8g1233 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 198 IPR013083 -
Vvi8g1233 345 Pfam PHD-finger 144 185 IPR019787 -
Vvi8g1233 345 ProSiteProfiles Zinc finger PHD-type profile. 141 186 IPR019787 -
Vvi8g1233 345 CDD PHD1_AIRE 143 183 - -
Vvi8g1233 345 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 130 207 - -
Vvi8g1233 345 SUPERFAMILY FYVE/PHD zinc finger 130 185 IPR011011 -
Vvi8g1233 345 PANTHER AUTOIMMUNE REGULATOR 24 338 - -
Vvi8g1233 345 Pfam Tify domain binding domain 77 127 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1233 Vvi-Chr8 18418222 18426255 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1233 41 336 PHD Transcription Factor Family AT2G36720 60.443 9.52e-137 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi8g1233 TDBD 3.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1233 - - vri:117921044 632.869