LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi8g1232	ATGAGAATCAAAACCACCCTCTTCTTTTGGTCCTCTGCTTTTCTCATTGCACTTCTTTCTATTACAGTTGCCCTCTTTACTATCTCTTCTTCCACTGCCACTATTACTCAAGGTGACCTTGAACTGGCCTTTCTCCGAAGGATTGTCAAGCAAAGCGGCGTAGAGGACTTCCTGTCTCTTTTAAATCAAGCCACTGATAGAGCATCCCAGAGGCACCACCACCACCACCATCATCATCGGAAGCCTGAGGTCATATGCGATGATGCCAAATGGAAGTCTAAGATCATATCGAGTTATAATGTTTCCCTTATTTTGACGGTGGATTTAAAGGGTTGTGCAAATTTCAGCAGTGTGCAGAAGGCGGTAGATGCTGTTCCTGATTCTAGCCTCTCCAGGACCCTCATCATTATGGATTCCGGCATTTACAGGGAAAAGGTAGTAGTGGGCGCTAGCAAGACGAATTTGATATTTCAAGGCCAGGGTTATCTTAATACAGCCATAGCATGGAACGACACTGCAAATTCTACTGGAGGGACCTCCTACAGCTATTCAGTGGCCATCTTTGCTCCCAACTTCACAGCATACAACATTAGCTTTCAGAATACAGCTCCTCCAGCATCACCTGGCGATGTTGGAGGGCAGGCAGTGGCGCTTAGAGTCGCAAATGATCAAGCCGCATTCTATGGTTGTGGATTTTATGGAGCCCAAGACACGCTTCATGATGATCGAGGGAGGCATTATTTTAGAGAATGTTTCATCCAAGGATCCATTGATTTCATCTTTGGAAATGCTAGATCCCTCTATGAGGAGTGCACAATAAATTCCACAGCGAAAGAGGTCTCATCTGGAATAAGCGGAGCGATCACAGCTCAAGGGAGGCAATCAGTGGATGAGAAAACAGGGTTTTCCTTTGTAAAGTGTGTAATTGGTGGAACTGGAAGAGTGTGGCTTGGCAGAGCTTGGGGAGCCTATGCCACTGTGGTTTTTTCTAACACATACATGGCCGATCTTGTAGCTTCAGATGGATGGAATGATTGGAGAGACCCCTCTAGAGACCAGACCGTCTTCTTCGGAGAATATGATTGCAAGGGACCAGGATCAAACAACACATACAGGGTGTCCTATGCAAAGCAACTGATGCAGTCGGAAGCAGCCCCTTACCTGGATGTTTCATACATTGATGGAAATGAATGGCTTCTTCCCCTTCCAAAGGATCCAACAAATGAAAGGCACAGAAAAATATGTCACGCATGCAGGTATCTTCTAAATCAATTTCATTTTATCACTATGGTGGCTGCCATGGAGAAAAACTCTTTCCTTTTTCTCTCCTTTCTTGTACTTTTTCCATTGCTTCATGGATATACTGCTTTTGCCGCAGGAACGGATGATGGGTCTGAGCAGTGGGGATACGTGGAAGTCCGACCCAAGGCACACCTATTTTGGTGGCTCTACAAAAGTCCTGACAGAGTGGAAGATCCATCCAACCCATGGCCTATACTTCTGTGGCTCCAGGGAGGCCCTGATAGTCCTGTGGCAACAGGTTTTAGTTATGTGGAGGACGAGAGCTTGGTGGTTACCACTGATGATGAGGCTGCAACGGATCTGACCACCCTGTTGAAGGAGCTATTCAATGGAAACGAGACCCTCCAAAAAAGTCCTCTCTACATTGTTGCGGAGTCTTATGGAGGAAAATTTGCAGTCACTCTTGGGCTGTCGGCTTTAAAAGCAATTGAAGCAGGGGAATTGAAGCTTCAACTTGGGGGTTTAGGAAGAAGTTTTACACGTAATCTAACACAAACGGTCTGCGAAAACAGACTAGCACTCCAGATACAGCAGCAGCTTGCAGAAGGGCAATACAAAGAAGCAACAGAAACATTTTTTGAACTTGAGAATGTGATTTCCATCAGCAGTAACGATGTGGACTTCTACAACTTCATGGTGGATTATGCAAACGATCCCGTCCTTTCTACGTCTGGGGGATGGAATGAAGTAATGATGGGAAGGGACCCGCGATATCTTGGTGCCAAGAAATCTTTATCAAGTAATGGTTCATCTTCTACGGATGACCTTCCCAGCTTAATGAATGGACCTATCAGAGAAAAGCTAAAGATTATCCCTGAAAGTGTAAGTTGGGGAGGACAGGGTAACCTTGTTTTTCCTGCAATGGCTGGTGATTTCATGAGACCAAGAATAAACGAGCTTGATGTCATATGCTCAACCAAAGGTGCTGAAGCATGGCTCGACAAACTCAAATGGGGTGATTTGAAAACCTTCTTGAGCTTGGACCGTACTCCATTGTATTGTGGCAACGATGAAACGACTACAAAAGGATTTGTCAAGTCATACAAAAACTTGTTCTTCTATTGGATTCTGGGGGCCGGCCACTTTGTTCCAGTAGAGCAGCCCTGTGTTTCTCTGGAGATGGTGGGCAACATTACTCGATCACCAAATCTTCATTCGTAA	2463	0.4531	MRIKTTLFFWSSAFLIALLSITVALFTISSSTATITQGDLELAFLRRIVKQSGVEDFLSLLNQATDRASQRHHHHHHHHRKPEVICDDAKWKSKIISSYNVSLILTVDLKGCANFSSVQKAVDAVPDSSLSRTLIIMDSGIYREKVVVGASKTNLIFQGQGYLNTAIAWNDTANSTGGTSYSYSVAIFAPNFTAYNISFQNTAPPASPGDVGGQAVALRVANDQAAFYGCGFYGAQDTLHDDRGRHYFRECFIQGSIDFIFGNARSLYEECTINSTAKEVSSGISGAITAQGRQSVDEKTGFSFVKCVIGGTGRVWLGRAWGAYATVVFSNTYMADLVASDGWNDWRDPSRDQTVFFGEYDCKGPGSNNTYRVSYAKQLMQSEAAPYLDVSYIDGNEWLLPLPKDPTNERHRKICHACRYLLNQFHFITMVAAMEKNSFLFLSFLVLFPLLHGYTAFAAGTDDGSEQWGYVEVRPKAHLFWWLYKSPDRVEDPSNPWPILLWLQGGPDSPVATGFSYVEDESLVVTTDDEAATDLTTLLKELFNGNETLQKSPLYIVAESYGGKFAVTLGLSALKAIEAGELKLQLGGLGRSFTRNLTQTVCENRLALQIQQQLAEGQYKEATETFFELENVISISSNDVDFYNFMVDYANDPVLSTSGGWNEVMMGRDPRYLGAKKSLSSNGSSSTDDLPSLMNGPIREKLKIIPESVSWGGQGNLVFPAMAGDFMRPRINELDVICSTKGAEAWLDKLKWGDLKTFLSLDRTPLYCGNDETTTKGFVKSYKNLFFYWILGAGHFVPVEQPCVSLEMVGNITRSPNLHS*	821

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi8g1232	820	ProSitePatterns	Serine carboxypeptidases, serine active site.	556	563	IPR018202	GO:0004185
	Vvi8g1232	820	SUPERFAMILY	alpha/beta-Hydrolases	465	818	IPR029058	-
	Vvi8g1232	820	Gene3D	alpha/beta hydrolase	458	508	IPR029058	-
	Vvi8g1232	820	ProSitePatterns	Pectinesterase signature 2.	253	262	IPR033131	-
	Vvi8g1232	820	FunFam	Pectinesterase	99	404	-	-
	Vvi8g1232	820	Gene3D	-	99	403	IPR012334	-
	Vvi8g1232	820	PANTHER	ACYL-COA THIOESTER HYDROLASE YBHC-RELATED	93	399	-	-
	Vvi8g1232	820	Pfam	Serine carboxypeptidase	508	605	IPR001563	GO:0004185\|GO:0006508
	Vvi8g1232	820	Pfam	Serine carboxypeptidase	464	507	IPR001563	GO:0004185\|GO:0006508
	Vvi8g1232	820	Pfam	Serine carboxypeptidase	734	812	IPR001563	GO:0004185\|GO:0006508

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi8g1232	Vvi-Chr8	18403024	18412633	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi8g1232	80	399	Carbohydrate Esterase	AT1G05310	54.489	7.71e-122	371

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi8g1232	-		-	vvi:100253851	848.58

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