Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1232 ATGAGAATCAAAACCACCCTCTTCTTTTGGTCCTCTGCTTTTCTCATTGCACTTCTTTCTATTACAGTTGCCCTCTTTACTATCTCTTCTTCCACTGCCACTATTACTCAAGGTGACCTTGAACTGGCCTTTCTCCGAAGGATTGTCAAGCAAAGCGGCGTAGAGGACTTCCTGTCTCTTTTAAATCAAGCCACTGATAGAGCATCCCAGAGGCACCACCACCACCACCATCATCATCGGAAGCCTGAGGTCATATGCGATGATGCCAAATGGAAGTCTAAGATCATATCGAGTTATAATGTTTCCCTTATTTTGACGGTGGATTTAAAGGGTTGTGCAAATTTCAGCAGTGTGCAGAAGGCGGTAGATGCTGTTCCTGATTCTAGCCTCTCCAGGACCCTCATCATTATGGATTCCGGCATTTACAGGGAAAAGGTAGTAGTGGGCGCTAGCAAGACGAATTTGATATTTCAAGGCCAGGGTTATCTTAATACAGCCATAGCATGGAACGACACTGCAAATTCTACTGGAGGGACCTCCTACAGCTATTCAGTGGCCATCTTTGCTCCCAACTTCACAGCATACAACATTAGCTTTCAGAATACAGCTCCTCCAGCATCACCTGGCGATGTTGGAGGGCAGGCAGTGGCGCTTAGAGTCGCAAATGATCAAGCCGCATTCTATGGTTGTGGATTTTATGGAGCCCAAGACACGCTTCATGATGATCGAGGGAGGCATTATTTTAGAGAATGTTTCATCCAAGGATCCATTGATTTCATCTTTGGAAATGCTAGATCCCTCTATGAGGAGTGCACAATAAATTCCACAGCGAAAGAGGTCTCATCTGGAATAAGCGGAGCGATCACAGCTCAAGGGAGGCAATCAGTGGATGAGAAAACAGGGTTTTCCTTTGTAAAGTGTGTAATTGGTGGAACTGGAAGAGTGTGGCTTGGCAGAGCTTGGGGAGCCTATGCCACTGTGGTTTTTTCTAACACATACATGGCCGATCTTGTAGCTTCAGATGGATGGAATGATTGGAGAGACCCCTCTAGAGACCAGACCGTCTTCTTCGGAGAATATGATTGCAAGGGACCAGGATCAAACAACACATACAGGGTGTCCTATGCAAAGCAACTGATGCAGTCGGAAGCAGCCCCTTACCTGGATGTTTCATACATTGATGGAAATGAATGGCTTCTTCCCCTTCCAAAGGATCCAACAAATGAAAGGCACAGAAAAATATGTCACGCATGCAGGTATCTTCTAAATCAATTTCATTTTATCACTATGGTGGCTGCCATGGAGAAAAACTCTTTCCTTTTTCTCTCCTTTCTTGTACTTTTTCCATTGCTTCATGGATATACTGCTTTTGCCGCAGGAACGGATGATGGGTCTGAGCAGTGGGGATACGTGGAAGTCCGACCCAAGGCACACCTATTTTGGTGGCTCTACAAAAGTCCTGACAGAGTGGAAGATCCATCCAACCCATGGCCTATACTTCTGTGGCTCCAGGGAGGCCCTGATAGTCCTGTGGCAACAGGTTTTAGTTATGTGGAGGACGAGAGCTTGGTGGTTACCACTGATGATGAGGCTGCAACGGATCTGACCACCCTGTTGAAGGAGCTATTCAATGGAAACGAGACCCTCCAAAAAAGTCCTCTCTACATTGTTGCGGAGTCTTATGGAGGAAAATTTGCAGTCACTCTTGGGCTGTCGGCTTTAAAAGCAATTGAAGCAGGGGAATTGAAGCTTCAACTTGGGGGTTTAGGAAGAAGTTTTACACGTAATCTAACACAAACGGTCTGCGAAAACAGACTAGCACTCCAGATACAGCAGCAGCTTGCAGAAGGGCAATACAAAGAAGCAACAGAAACATTTTTTGAACTTGAGAATGTGATTTCCATCAGCAGTAACGATGTGGACTTCTACAACTTCATGGTGGATTATGCAAACGATCCCGTCCTTTCTACGTCTGGGGGATGGAATGAAGTAATGATGGGAAGGGACCCGCGATATCTTGGTGCCAAGAAATCTTTATCAAGTAATGGTTCATCTTCTACGGATGACCTTCCCAGCTTAATGAATGGACCTATCAGAGAAAAGCTAAAGATTATCCCTGAAAGTGTAAGTTGGGGAGGACAGGGTAACCTTGTTTTTCCTGCAATGGCTGGTGATTTCATGAGACCAAGAATAAACGAGCTTGATGTCATATGCTCAACCAAAGGTGCTGAAGCATGGCTCGACAAACTCAAATGGGGTGATTTGAAAACCTTCTTGAGCTTGGACCGTACTCCATTGTATTGTGGCAACGATGAAACGACTACAAAAGGATTTGTCAAGTCATACAAAAACTTGTTCTTCTATTGGATTCTGGGGGCCGGCCACTTTGTTCCAGTAGAGCAGCCCTGTGTTTCTCTGGAGATGGTGGGCAACATTACTCGATCACCAAATCTTCATTCGTAA 2463 0.4531 MRIKTTLFFWSSAFLIALLSITVALFTISSSTATITQGDLELAFLRRIVKQSGVEDFLSLLNQATDRASQRHHHHHHHHRKPEVICDDAKWKSKIISSYNVSLILTVDLKGCANFSSVQKAVDAVPDSSLSRTLIIMDSGIYREKVVVGASKTNLIFQGQGYLNTAIAWNDTANSTGGTSYSYSVAIFAPNFTAYNISFQNTAPPASPGDVGGQAVALRVANDQAAFYGCGFYGAQDTLHDDRGRHYFRECFIQGSIDFIFGNARSLYEECTINSTAKEVSSGISGAITAQGRQSVDEKTGFSFVKCVIGGTGRVWLGRAWGAYATVVFSNTYMADLVASDGWNDWRDPSRDQTVFFGEYDCKGPGSNNTYRVSYAKQLMQSEAAPYLDVSYIDGNEWLLPLPKDPTNERHRKICHACRYLLNQFHFITMVAAMEKNSFLFLSFLVLFPLLHGYTAFAAGTDDGSEQWGYVEVRPKAHLFWWLYKSPDRVEDPSNPWPILLWLQGGPDSPVATGFSYVEDESLVVTTDDEAATDLTTLLKELFNGNETLQKSPLYIVAESYGGKFAVTLGLSALKAIEAGELKLQLGGLGRSFTRNLTQTVCENRLALQIQQQLAEGQYKEATETFFELENVISISSNDVDFYNFMVDYANDPVLSTSGGWNEVMMGRDPRYLGAKKSLSSNGSSSTDDLPSLMNGPIREKLKIIPESVSWGGQGNLVFPAMAGDFMRPRINELDVICSTKGAEAWLDKLKWGDLKTFLSLDRTPLYCGNDETTTKGFVKSYKNLFFYWILGAGHFVPVEQPCVSLEMVGNITRSPNLHS* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1232 820 ProSitePatterns Serine carboxypeptidases, serine active site. 556 563 IPR018202 GO:0004185
Vvi8g1232 820 SUPERFAMILY alpha/beta-Hydrolases 465 818 IPR029058 -
Vvi8g1232 820 Gene3D alpha/beta hydrolase 458 508 IPR029058 -
Vvi8g1232 820 ProSitePatterns Pectinesterase signature 2. 253 262 IPR033131 -
Vvi8g1232 820 FunFam Pectinesterase 99 404 - -
Vvi8g1232 820 Gene3D - 99 403 IPR012334 -
Vvi8g1232 820 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 93 399 - -
Vvi8g1232 820 Pfam Serine carboxypeptidase 508 605 IPR001563 GO:0004185|GO:0006508
Vvi8g1232 820 Pfam Serine carboxypeptidase 464 507 IPR001563 GO:0004185|GO:0006508
Vvi8g1232 820 Pfam Serine carboxypeptidase 734 812 IPR001563 GO:0004185|GO:0006508
Vvi8g1232 820 SUPERFAMILY Pectin lyase-like 101 402 IPR011050 -
Vvi8g1232 820 PRINTS Carboxypeptidase C serine protease (S10) family signature 507 517 IPR001563 GO:0004185|GO:0006508
Vvi8g1232 820 PRINTS Carboxypeptidase C serine protease (S10) family signature 785 798 IPR001563 GO:0004185|GO:0006508
Vvi8g1232 820 PRINTS Carboxypeptidase C serine protease (S10) family signature 542 567 IPR001563 GO:0004185|GO:0006508
Vvi8g1232 820 Pfam Pectinesterase 106 395 IPR000070 GO:0030599|GO:0042545
Vvi8g1232 820 Gene3D alpha/beta hydrolase 509 819 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1232 Vvi-Chr8 18403024 18412633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1232 80 399 Carbohydrate Esterase AT1G05310 54.489 7.71e-122 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1232 - - vvi:100253851 848.58