Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1227 ATGCTTGAAGTACATGCTATTAAGAATTTGTTCATCATTATATTTATTTTGATGCAGGATGGATTTAAGGATGATTCTTTGAGGATAATGAAGGATATTCAAAGGAGTGGTGCTCAATGCCAGGTGCTTCTGTTTTCTGCTACTTTCAATGATACAGTAAAAAATTTTGTAACAAGGATAGTCAAAGACTACAATCAAATGTTTGTAAAGAAAGAAGAACTATCCTTGCAGTCTGTGAAGCAGTATAAGGTGAAATGCCCTGATGAACTCTCCAAGATTCTTGTGATTAAAGACAAAATTTTTGAGATAGGACAGAAGCTGGGGCAAACAATTATTTTTGTCAGGACGAAGAATAGTGCAGGAATGTTACATAAAGCACTTGTGGATTTTGGTTACGAAGTTACTACCATTCAAGGAGCTCTTAGACAAGAAGATAGAGACAAGATAATCAAGGAGTTCAAGGATGGATTAACCCAAGTTCTCATATCGACTGATCTCCTTGCCCGAGGTTTCGACCAGTCAAGGGTGAACTTGGTCGTCAATTATGATCTGCCGCTAAAATATGGGACACAGGCAGAGCCTGACTATGAGGTGTACTTGCATAGAATTGGCAGGGCAGGACGTTTTGGCCGCAAGGGAGCTGTTTTTAATTTGCTGTGCAGTGACAAGGACAACATCCTGATCTCAAAAATTGAAAATCATTTTGGGGTTCAGATTGCAGAGGTAAGGTCTCCTTTATGA 741 0.39 MLEVHAIKNLFIIIFILMQDGFKDDSLRIMKDIQRSGAQCQVLLFSATFNDTVKNFVTRIVKDYNQMFVKKEELSLQSVKQYKVKCPDELSKILVIKDKIFEIGQKLGQTIIFVRTKNSAGMLHKALVDFGYEVTTIQGALRQEDRDKIIKEFKDGLTQVLISTDLLARGFDQSRVNLVVNYDLPLKYGTQAEPDYEVYLHRIGRAGRFGRKGAVFNLLCSDKDNILISKIENHFGVQIAEVRSPL* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1227 246 CDD SF2_C_DEAD 79 219 - -
Vvi8g1227 246 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 18 225 - -
Vvi8g1227 246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 228 IPR027417 -
Vvi8g1227 246 Pfam Helicase conserved C-terminal domain 102 210 IPR001650 -
Vvi8g1227 246 SMART helicmild6 121 210 IPR001650 -
Vvi8g1227 246 Gene3D - 80 245 IPR027417 -
Vvi8g1227 246 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 95 246 IPR001650 -
Vvi8g1227 246 Gene3D - 15 79 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1227 Vvi-Chr8 18385567 18387151 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1227 17 242 Eukaryotic Initiation Factors Gene Family AT3G19760 34.802 1.80e-35 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1227 K18655 - vvi:100854880 472.626