Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1223 ATGGCGGAAGATGCACCAAAGCCAAAGCAACTGTGGGGAGATGTGGAAGATGATCCTCCGTCTTCATCTTCCACACCTGCAGTCGACCTCCCCGTGGAGTCTTTGACTATTCACGATGAGGCCAAGGAGGCCGAATCACTTGACGAGCCGAAGGATTCGAGCATCCAGGCGGTTACTTCTGGTGATACACCATACACTTCTGCCAGTACTTTTGAGGATTTGAATTTGTCACCAGAGCTGTTGAGGGGGATTTATAGTGAGATGAAGTTTGAGAGGCCTAGTAAAATTCAGGCAATCAGTTTGCCTATGATTTTGACTCCTCCTTACAAAAATTTAATTGCTCAAGCTCACAATGGTTCTGGCAAGACGACTTGTTTTGTACTTGGAATGTTGAGTCGTGTTGATCCAAAGCTGCAAGTTCCTCAGGCCCTTTGCATTTGTCCTACAAGAGAATTGGCAATACAGAATTTGGAGGTGCTTCGTAAGATGGGAAAGCACACAGGGATTGAATCTGAATGCGCTATTCCAATGGACAGTGCAAACTATACTTCAATTTCACAGCGACCACCGGTGAAGGCGCAGGTAGTGATCGGCACACCTGGTACAGTAAAGAAATGGATGTCACATAGAAAATTGGGCATAAGCAACATGAAGATTCTTGTTTTTGATGAAGCTGATCACATGTTGGCTGAGGATGGATTTAAGGATGATTCTTTGAGGATAATGAAGGCTATTGAAAAGAGTGGTGCTCAATGCCAGGTGCTTCTGTTTTCTGCTACTTTCAACGATACAGTAAAAAATTTTGTAACAAGGATAGTCAAAGACTACAATCAAATGTTTGTAAAGAAAGAAGAACTATCCTTGCAGTCTGTGAAGCAGTATAAGGTGAAATGCCCTGATGAACTCTCCAAGATTCTTGTGATTAAAGACAAAATTTTTGAGATAGGACAGAAGCTGGGGCAAACAATTATTTTTGTCAGGACGAAGAATAGTGCAGGAATGTTACACAAAGCACTTGTGGATTTTGGTTACGAAGTTACTACCATTCAAGGAGCTCTTAGACAAGAAGATAGAGACAAGATAATCAAGGAGTTCAAGGATGGATTAACCCAAGTTCTCATATCGACTGATCTCCTTGCCCGAGGTTTCGACCAGTCAAGGGTGAACTTGGTCGTCAATTATGATCTGCCGCTAAAATATGGGACACAGGCAGAGCCTGACTATGAGGTGTATTTGCATAGAATTGGTAGGGCAGGACGTTTTGGCCGCAAGGGAGCTGTTTTTAATTTGCTGTGCAGTGACAAGGACAACATCCTGATCTCAAAAATTGAAAATCATTTTGGGGTTCAGATTGCAGAGGTAAGGTCTCCTTTATGA 1377 0.4277 MAEDAPKPKQLWGDVEDDPPSSSSTPAVDLPVESLTIHDEAKEAESLDEPKDSSIQAVTSGDTPYTSASTFEDLNLSPELLRGIYSEMKFERPSKIQAISLPMILTPPYKNLIAQAHNGSGKTTCFVLGMLSRVDPKLQVPQALCICPTRELAIQNLEVLRKMGKHTGIESECAIPMDSANYTSISQRPPVKAQVVIGTPGTVKKWMSHRKLGISNMKILVFDEADHMLAEDGFKDDSLRIMKAIEKSGAQCQVLLFSATFNDTVKNFVTRIVKDYNQMFVKKEELSLQSVKQYKVKCPDELSKILVIKDKIFEIGQKLGQTIIFVRTKNSAGMLHKALVDFGYEVTTIQGALRQEDRDKIIKEFKDGLTQVLISTDLLARGFDQSRVNLVVNYDLPLKYGTQAEPDYEVYLHRIGRAGRFGRKGAVFNLLCSDKDNILISKIENHFGVQIAEVRSPL* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1223 458 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 61 435 - -
Vvi8g1223 458 SMART helicmild6 333 422 IPR001650 -
Vvi8g1223 458 MobiDBLite consensus disorder prediction 52 70 - -
Vvi8g1223 458 MobiDBLite consensus disorder prediction 35 50 - -
Vvi8g1223 458 Pfam DEAD/DEAH box helicase 95 267 IPR011545 GO:0003676|GO:0005524
Vvi8g1223 458 Gene3D - 286 456 IPR027417 -
Vvi8g1223 458 CDD SF2_C_DEAD 291 431 - -
Vvi8g1223 458 CDD DEADc_DDX19_DDX25 76 279 - -
Vvi8g1223 458 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 103 279 IPR014001 -
Vvi8g1223 458 Pfam Helicase conserved C-terminal domain 314 422 IPR001650 -
Vvi8g1223 458 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 307 458 IPR001650 -
Vvi8g1223 458 Gene3D - 48 285 IPR027417 -
Vvi8g1223 458 SMART ultradead3 89 294 IPR014001 -
Vvi8g1223 458 MobiDBLite consensus disorder prediction 1 70 - -
Vvi8g1223 458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 440 IPR027417 -
Vvi8g1223 458 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 69 98 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1223 Vvi-Chr8 18353680 18358264 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1223 52 454 Eukaryotic Initiation Factors Gene Family AT3G19760 34.739 1.96e-66 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1223 K18655 - vvi:100257270 899.042