Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1219 ATGCCTTTTTGCATCTCTTTTCTTTCTTTTGTCTTTCCTTTCTTCCTTTGGGCATCATTGAAAGTTCCTTACAGCTTATTTTACTTTGCCCTTTTCATTTCATCCTTCAAATGGCTTGACGTTGTTTCAATAACTCCTGAGGTGACATCTCGAGTCCTTAGCCGGAGCTTGATCAAAGAACTTGTTCATCTGTATGGACAGTCACACCTTTATCGAAATCCTGCTTATGATGGAAGGAGGGGCATTTATACAGCAGGTCCTTTACCATTTACCTCAAAGGAATTCATGATTAAGTTGGAAGAGGGAAATGATGGAACTCATGAAAGAAAAAAGAAGGAATTCATAGTGAAAATTAGATTTGCTACCAGCACAGACATTCACAATCTGCGAGAGTTCTTGCTCAGCAGACAAAGTAATGTGCCATATGAAATCATCCATGCTCTTGATGTGGTTCTTAAGGATTCTCTATCAAACAACAGATGCACTCTGTCGGGGAAGACATTTTTCCCACTTGGTTTAGGAGCAAGAAGTGAGATTGGCAATGGGGTACAATGCTGGAATGGATTCTACCAGAGTCTTCGGCCCACCCAGATGGGATTGTCCCTGAATATTGATGTGTCCTCCAAATCCTTTTACGAACCAATTCCTGTCATCGAATTTGCGGCTAAATTTCTAAATTTGGAGGATCCATCAATAATGGCCCGAATGCCTCTGTCTAATGATGATCGTTTAAAGTTGAAGAAAGTTCTGAAAGGAATCAAGGTGGAAGTCACTCATGGGGGACAAAGGCGTTACAAAATTTTTGACATAACAGAGCAACCAACAAACCAACTAAGGTTTACTGAAGATGGACAACAGAAGTCAGTGATTCAGTATTTTCGTGAGAAATACAATATTGTCCTTCGTTATGCCTCTTGGCCTTCACTTCGATCAGGGAAGGATTCAAGACCCATTTATTTACCCATGGAGACATGCACAATTGTTGCAGGGCAGCGTTATGCTAAGAAGTTGAATGAGAGGCAGGTTGCGTCCATGTTGAGAATGACATGCCAGCGGCCCTGGCGGAGACAAGAGATTATACATCAGATTGCTGATCAAGATGATTATATAAGGAATGATTTTGTCAAGGAGTTTGGAGTTAATGTGAGTGTGGATATGGCAGCCATTGATGCCAGAGTTCTCCCACCCCCTGCTCTCAAGTATCATGATTCTGGAAGAGAGAAAACTATTAGACCACGCACAGGACAGTGGAATGCGCAGCATGTGAAATTATATCATGGTGCTGTAGTGGAGTACTGGATGTGTGTAAACTTCTCTAATTTAAAACAAGAAGTGGTTTTCAATTTTTGTCAGCATTTGGTAGACATGTGCTGCCGCAAAGGAATGGATTTTGCTCGTAACCCTTTGTTTCCTATTCAATCAAGTCCACCTGGGCAGATAGAGGCAAAGCTCTCAGATGTTCACCACCAGTGCAGAGTTGAGGGAAAGCAACTCCAAATGTTGATTATTATTCTCCCCGAAGTCAATGCATACTATGGGAAAATCAAAAGAATATGTGAAACAGAGCTTGGAATGGTTTCTCAGTGCTGTCAGCCCAGACATGCTAGAACTTGTAATCGGATTTATCTTGAAAATATCGTCTTGAAGATCAATGTGAAGGCCGGGGGTCAAAATGCTATATTGGAAGACACTCTGTATGGAAGAATACCTCTTCTGACTGACATTCCTACTATTATATTTGGTGCTGATGTTACCCATCCACAATCAGGGGAAGATCAAGGCCCTTCAATAGCAGCAGTGGTGGCATCAATGGACTGGCCAACAGTGGTTACATACAGGGGCCTGGTTTCTGCACAGCCTCATCGATCAGAAATTATCGAGGACCTCTTCAGAGTTAAAGAAGATCCAAAGAGAGGCGTAGTTCATGCAGGAATGATAAGGGAACTCTTACTTGCTTTCAAGAGTTCAACTGGCCTCAAACCTTTGAGGATTATCTTCTTCAGAGATGGCGTTAGTGAGGGCATGTTTGAAATGGTGCTGCTGAAAGAAATGGATGCCATCCGAAAGGCTTGTGCATCTCTAGAGGAAGGATATCTCCCGCCGGTCACTTTTATTGTAGTGCAGAAAAGGCACAACACCCGGCTGTTTCCTACAAATGAAGACAATATGGATAAGAGTGGAAACATACTCCCTGGAACTGTGGTGGATACGGTGATCTGCCATCCATCTGAGCATGACTTTTACCTGTGCAGCCATGCAGGAATTCGTGGTACCAGCAGACCTGCGCACTATCGTGTTCTCTTGGATGAGAATAAATTCTCAGCTGATGCATTGCAAATGCTGGCAAACGATCTTTGCTACACGTATGCAAGGTGCACCCGGTCTGTTTCCATAGTGCCTCCTGTTTATTATGCACACTTGGCGGCATTCAGGGCGAAGTTCTACGTGGAAAGAAGCGGTGCCCAATATGAAGGTGGATCAAGCACAGGGCCTGATGATAGAATAGAGCTGCCGGAGATAGATCCAACTGTGAAAAGCGTCATGTTCTATTGCTAA 2556 0.4319 MPFCISFLSFVFPFFLWASLKVPYSLFYFALFISSFKWLDVVSITPEVTSRVLSRSLIKELVHLYGQSHLYRNPAYDGRRGIYTAGPLPFTSKEFMIKLEEGNDGTHERKKKEFIVKIRFATSTDIHNLREFLLSRQSNVPYEIIHALDVVLKDSLSNNRCTLSGKTFFPLGLGARSEIGNGVQCWNGFYQSLRPTQMGLSLNIDVSSKSFYEPIPVIEFAAKFLNLEDPSIMARMPLSNDDRLKLKKVLKGIKVEVTHGGQRRYKIFDITEQPTNQLRFTEDGQQKSVIQYFREKYNIVLRYASWPSLRSGKDSRPIYLPMETCTIVAGQRYAKKLNERQVASMLRMTCQRPWRRQEIIHQIADQDDYIRNDFVKEFGVNVSVDMAAIDARVLPPPALKYHDSGREKTIRPRTGQWNAQHVKLYHGAVVEYWMCVNFSNLKQEVVFNFCQHLVDMCCRKGMDFARNPLFPIQSSPPGQIEAKLSDVHHQCRVEGKQLQMLIIILPEVNAYYGKIKRICETELGMVSQCCQPRHARTCNRIYLENIVLKINVKAGGQNAILEDTLYGRIPLLTDIPTIIFGADVTHPQSGEDQGPSIAAVVASMDWPTVVTYRGLVSAQPHRSEIIEDLFRVKEDPKRGVVHAGMIRELLLAFKSSTGLKPLRIIFFRDGVSEGMFEMVLLKEMDAIRKACASLEEGYLPPVTFIVVQKRHNTRLFPTNEDNMDKSGNILPGTVVDTVICHPSEHDFYLCSHAGIRGTSRPAHYRVLLDENKFSADALQMLANDLCYTYARCTRSVSIVPPVYYAHLAAFRAKFYVERSGAQYEGGSSTGPDDRIELPEIDPTVKSVMFYC* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1219 851 ProSiteProfiles Piwi domain profile. 500 817 IPR003165 GO:0003676
Vvi8g1219 851 SMART Piwi_a_2 500 817 IPR003165 GO:0003676
Vvi8g1219 851 Pfam Piwi domain 502 815 IPR003165 GO:0003676
Vvi8g1219 851 Pfam N-terminal domain of argonaute 42 152 IPR032474 -
Vvi8g1219 851 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 42 818 - -
Vvi8g1219 851 Gene3D - 569 851 IPR036397 GO:0003676
Vvi8g1219 851 SMART DUF1785_2 162 214 IPR014811 -
Vvi8g1219 851 Gene3D paz domain 209 333 - -
Vvi8g1219 851 FunFam Argonaute 10 393 562 - -
Vvi8g1219 851 Pfam PAZ domain 244 346 IPR003100 GO:0005515
Vvi8g1219 851 SUPERFAMILY PAZ domain 211 368 IPR036085 GO:0005515
Vvi8g1219 851 SMART PAZ_2_a_3 227 351 IPR003100 GO:0005515
Vvi8g1219 851 Gene3D - 393 563 - -
Vvi8g1219 851 ProSiteProfiles PAZ domain profile. 215 329 IPR003100 GO:0005515
Vvi8g1219 851 Pfam Argonaute linker 1 domain 165 213 IPR014811 -
Vvi8g1219 851 Pfam Argonaute linker 2 domain 356 401 IPR032472 -
Vvi8g1219 851 SUPERFAMILY Ribonuclease H-like 495 817 IPR012337 -
Vvi8g1219 851 CDD PAZ_argonaute_like 214 328 - -
Vvi8g1219 851 FunFam protein argonaute 10-like 568 851 - -
Vvi8g1219 851 CDD Piwi_ago-like 374 815 IPR045246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1219 Vvi-Chr8 18308666 18314201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1219 42 851 Eukaryotic Initiation Factors Gene Family AT1G48410 53.563 0.0 898
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1219 K11593 - vvi:100250362 1638.24