Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1218 ATGGCAACTATTCCCAGCATGAAACGACCTCTCCTTTGTAGTTCTCTTCTCTTTCTTCTTTTCTTCTGTCATCACTCTTCTTCCCAAAAGGACTGTCCAAACTGTGGCTCCATACAGGTCCCATATCCTCTAAGCACAAACCCCAACTGTGGTGACCCAGACTATTCACTCCGCTGTGATGGCGACTCCCAGAAACTCTACTTTGATGGCCTTAATGGGAGCTCTTATCTTGTTCTCAGAATCATGGCTTCATCTCAAAGGATGGTGGTGCAACCATCACCATGGCTGCCTGGCACATGTGTTACTCAAGACATGCCAGTGAGTGAGGGCCTCTGGTTAAACCAGACACGCCCCTTCAAGATCACCTCATCCAACACAATCTTCCTCTTCAACTGTTCGCCTCGCCTCTTGGTCTCACCTCTCAATTGCACACCTTCTAGTCTTTGCCACCACTACCTGGAGAGCTCAGGTCATGTTGACAGAAAGCGTGCTCTTCAGTGTGCAAGTGGTCTTGATCCCTGCTGCACTTTCGTGGCAGGTGGTATGCCTTCTGCATACAAGATTCGACTTCACAGTTCGGGTTGTAGAGCATTTAGAAGCATCCTTGGTTTGGATCCAGAAAAACCTCCAAGTCAATGGGAAGAAGGATTAGAGATTCAGTGGGCTCCTGCTCCAGAACCAGTTTGTAAAACACAACTTGATTGCACCAGGGATTCCAAATGTTCTCCTGCTGGTGGAAAAGGTCTCTTGCGCTGCCTCTGCAATAGGGGTTACTACTGGGACCTTGCTCGGGGTACTTGCCTGAAAAAGGAGAAAAACTCCAAATTGGCCATTAGCCTGAAGGTTTCAATAGGAGTAGTTTCCTTTTTCTCTCTTGCTGTAGCAATTGCTGCAGTCACAGTGAGGAGATCTGGGAAATTTTCTAACCAGGAAAAGCTCGTCAAGGCAAGAGAAGAAATGTTGAAGTCAAGCATGGGTGGGAAATCTGCAAGGATGTTTTCCCTGAAAGAGGTAAAGAAAGCAACAAATGGGTTTTCTAAAGACAGGGTTTTGGGAAGCGGGGGCTTTGGAGAAGTATACAAGGGTGAGCTTCATGATGGCACCATTGTGGCTGTCAAGTCAGCCAAAGTTGGCAACCTCAAAAGCACTCAGCAAGTACTGAATGAAGTTGGGATCCTTTCTCAAGTCAACCACAAGAACCTGGTTAAACTACTGGGTTGTTGCGTGGAAGCTGAGCAGCCACTGATGATCTACAATTACATTCCAAACGGGACCCTCCATGAACATTTGCATGGTAAGCGTTCCACTTTTCTGAAATGGGATACCAGGCTGCGAATTGCTCTACAAACTGCTGAAGCATTGGCTTATCTGCACTCTGCTGCACACACCCCCATCTACCACAGGGACGTGAAGTCAACAAATATACTTCTAGATGAAGATTTCAATGCAAAGGTGGCAGATTTTGGGCTATCCAGATTGGCTGAGCCAGGGCTAAGTCATGTGTCAACTTGTGCTCAGGGAACACTCGGGTACTTGGACCCTGAGTACTATCGCAACTACCAATTAACAGATAAAAGCGATGTTTACAGTTATGGGATTGTGATGCTTGAACTGCTGACTTCTCAGAAGGCAATCGACTTCTCCCGGGAGCCAGACGATATAAATCTAGCAATTTATGTGAGCCAACGAGCCAGTGATGGTGCAGTAATGGGAGTTGTGGACCAGCGGTTGCTTGGACATAATCCTTCTGTTGAGGTGATAACAAGCATAAGGCTCTTCTCAGAGCTTGCCCTTGCCTGTCTGAGGGAGAAGAAGGGGGAGAGGCCTAGCATGAAGGCCGTGGTTCAAGAACTTCAACGCATAATCAAATTTGTGGATAAAGAAGAGGTTTTTAGTGAGGTAAGTGCTTCAAAAATATGA 1920 0.4677 MATIPSMKRPLLCSSLLFLLFFCHHSSSQKDCPNCGSIQVPYPLSTNPNCGDPDYSLRCDGDSQKLYFDGLNGSSYLVLRIMASSQRMVVQPSPWLPGTCVTQDMPVSEGLWLNQTRPFKITSSNTIFLFNCSPRLLVSPLNCTPSSLCHHYLESSGHVDRKRALQCASGLDPCCTFVAGGMPSAYKIRLHSSGCRAFRSILGLDPEKPPSQWEEGLEIQWAPAPEPVCKTQLDCTRDSKCSPAGGKGLLRCLCNRGYYWDLARGTCLKKEKNSKLAISLKVSIGVVSFFSLAVAIAAVTVRRSGKFSNQEKLVKAREEMLKSSMGGKSARMFSLKEVKKATNGFSKDRVLGSGGFGEVYKGELHDGTIVAVKSAKVGNLKSTQQVLNEVGILSQVNHKNLVKLLGCCVEAEQPLMIYNYIPNGTLHEHLHGKRSTFLKWDTRLRIALQTAEALAYLHSAAHTPIYHRDVKSTNILLDEDFNAKVADFGLSRLAEPGLSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSYGIVMLELLTSQKAIDFSREPDDINLAIYVSQRASDGAVMGVVDQRLLGHNPSVEVITSIRLFSELALACLREKKGERPSMKAVVQELQRIIKFVDKEEVFSEVSASKI* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1218 639 ProSiteProfiles Protein kinase domain profile. 345 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1218 639 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Vvi8g1218 639 SUPERFAMILY Protein kinase-like (PK-like) 323 618 IPR011009 -
Vvi8g1218 639 Pfam Protein tyrosine and serine/threonine kinase 347 618 IPR001245 GO:0004672|GO:0006468
Vvi8g1218 639 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 13 623 IPR044652 GO:0004672
Vvi8g1218 639 CDD STKc_IRAK 351 621 - -
Vvi8g1218 639 FunFam Wall-associated receptor kinase-like 20 421 630 - -
Vvi8g1218 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Vvi8g1218 639 SMART serkin_6 345 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1218 639 Gene3D Transferase(Phosphotransferase) domain 1 421 636 - -
Vvi8g1218 639 FunFam Wall-associated receptor kinase-like 20 308 420 - -
Vvi8g1218 639 Pfam Wall-associated receptor kinase galacturonan-binding 32 90 IPR025287 GO:0030247
Vvi8g1218 639 Gene3D Phosphorylase Kinase; domain 1 314 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1218 Vvi-Chr8 18300064 18301983 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1218 32 628 Receptor kinase-like Gene Family AT5G02070 48.397 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vvi8g1218 PK_Tyr_Ser-Thr 9.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1218 - - vri:117920939 1268.06