Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1206 ATGGATGAGATAACTATATTGCAACAGATTGCGGAAGGAGACCCAGATGATAAGAAATGTGTTGTGAAGCTTTTGGATCATTTTAAGCATTCTGGTCCAAATGGGCAGCATGTTTGCATGGTTTTTGAGTATTTAGGGGATAACCTTTTAACTCTTATCAAGTATACTGATTATCATGGCTTGCCCCTTCACATGGTTAAGGAGATCTGTTTCCATGTTTTAGAGGGTTTGGATTACTTGCATGGACAGCTCTCAATTATACACACGGATTTGAAGCCAGAGAATATTTTGCTGTTATCCATGATAGACCCATCAAAGGATCCGAGAAAGTCAGGTGCAACACTAATTCTTCCATCAAATAAAGACAAGAATGTGTTTGAGTCGGGGGTTGGGAAAGACATTAAGACGTCAAATGGGGATTTGACTAAGAACCAGAAGAAAAAGATTAGAAGAAAGGCTAAGCAAGCAGCTAAAGGTTGTGTGGAGAAGGATGCAGCTGTTGAAGCTGAGCCAGATCCTGAAACATCAGGTGCATTAGAATCATCTCCTAATGTAAAATTAGATTTGGCTTCTGTGGAAGACCAACCCAATAGTTCTGGCAATGGGGACAGATTATTGGATGCTGATGGAAAAAAAGGACCTGGACAAGGAAATCAAGGTCATAGGAGAGGGAGTCATTCCATGAGGCAGAAGCTGTTGGCTTCTGTTGACCTGAAGTGCAAATTGGTTGACTTTGGTAATGCCTGTTGGACATACAAACAGTTCACAAATGATATCCAGACAAGGCAGTATAGGTGCCCAGAGGTTATCCTTGGATCTAAATATTCTACTTCTGCAGATCTTTGGTCCTTTGCTTGCATTTGTTTTGAGCTTGCAACTGGTGATGTTCTCTTCGATCCTCACAGTGGTGACAACTTTGATAGAGATGAGGACCATTTAGCACTGATGATGGAGCTCCTTGGAATGATGCCCCGCAAGGTAAGCTGA 987 0.4174 MDEITILQQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYTDYHGLPLHMVKEICFHVLEGLDYLHGQLSIIHTDLKPENILLLSMIDPSKDPRKSGATLILPSNKDKNVFESGVGKDIKTSNGDLTKNQKKKIRRKAKQAAKGCVEKDAAVEAEPDPETSGALESSPNVKLDLASVEDQPNSSGNGDRLLDADGKKGPGQGNQGHRRGSHSMRQKLLASVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKVS* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1206 328 FunFam Os03g0748400 protein 226 310 - -
Vvi8g1206 328 Gene3D Phosphorylase Kinase; domain 1 2 44 - -
Vvi8g1206 328 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 1 327 - -
Vvi8g1206 328 MobiDBLite consensus disorder prediction 155 170 - -
Vvi8g1206 328 ProSiteProfiles Protein kinase domain profile. 1 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1206 328 SUPERFAMILY Protein kinase-like (PK-like) 2 326 IPR011009 -
Vvi8g1206 328 Gene3D Transferase(Phosphotransferase) domain 1 13 100 - -
Vvi8g1206 328 Pfam Protein kinase domain 233 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1206 328 Pfam Protein kinase domain 3 99 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1206 328 MobiDBLite consensus disorder prediction 128 228 - -
Vvi8g1206 328 ProSitePatterns Serine/Threonine protein kinases active-site signature. 86 98 IPR008271 GO:0004672|GO:0006468
Vvi8g1206 328 SMART serkin_6 4 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1206 328 Gene3D Transferase(Phosphotransferase) domain 1 235 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1206 Vvi-Chr8 18197891 18202744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1206 1 328 EF-hand Containing Proteins AT5G22840 69.486 4.55e-149 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vvi8g1206 Pkinase 6.1e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1206 K08832 - vvi:100254468 659.062